Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1097 ATGAGTTACACCAACAGGAATAGAGGAGGAGGAGAAGAGAAGGAATATGAAGAGTCAGTCTTGCAGAGTTCTTGGAATTATAATTGGAATCCGTCCGCTAGATTGATAGCATCTCCACAACTAACAGTCGATGAGAATCTCGTGGTAGACCCCAAACAACTCTTTATTGGATCAAAATCGGGTGAAGGAGCTAATGGAAAAATTTATGAAGGAAGGTACAATCTTCTACGGAAATTAGAACAGGGCATGCAGTTTCGAAATTACTGTAACTCGAAAGTTCCCATGTTGCGTAGTAGCTTTGCTCGAGGAAGTACCTCAGAGACATACAAAAACTCGTTCTTAAAACCAAAGTCAGAGGCAGAGATCAAATTACTCGCTGCTAAGAAACGCCGTGAAGCGGAGAAGAGACGCCGGATGAGAATCAATGGTAAATATGCCATCCTCCGCCAAATCCTCCCGGGCTTGGTCAAAATGACCAAGGCATCAGTACTGGCAGAGACTATAAAGCAAGTGAAGGAGCTTGAGAAGAATGTATCACAACTGGAAGCTGCTTGTGGTGGTAGCTCAGGCGGGATCACTGTGTTTCCCAGTGGGGCAGACAAATTAGACTTGGAACACTGTAATGATGAGCAGGGCCTCATGAAGGCCACCTTGAGTTGTGAGGATAGGCCAGGATTAATGTCAGCCATCACAAGGGCGCTTAAGTCTGTGAAAGCTAAGGTGGTAAAGGCTGAGATGGTGGCTGTAGGAGGGAGAACCAGAAATGTGTTATGGATTCAAGGCTTGGGGAATGGAAATGAAGAGATAGGGGTACTGAAGAGGGCTCTGGAGGTTGCCATGCACAAGCCAACCTTTAAGAAGAAGCATCTGGCTCTGTAA 879 0.4573 MSYTNRNRGGGEEKEYEESVLQSSWNYNWNPSARLIASPQLTVDENLVVDPKQLFIGSKSGEGANGKIYEGRYNLLRKLEQGMQFRNYCNSKVPMLRSSFARGSTSETYKNSFLKPKSEAEIKLLAAKKRREAEKRRRMRINGKYAILRQILPGLVKMTKASVLAETIKQVKELEKNVSQLEAACGGSSGGITVFPSGADKLDLEHCNDEQGLMKATLSCEDRPGLMSAITRALKSVKAKVVKAEMVAVGGRTRNVLWIQGLGNGNEEIGVLKRALEVAMHKPTFKKKHLAL 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1097 292 Gene3D - 206 283 - -
Dere13g1097 292 Gene3D - 122 184 IPR036638 GO:0046983
Dere13g1097 292 PANTHER TRANSCRIPTION FACTOR BHLH30 103 283 IPR045847 GO:0003700|GO:0006355
Dere13g1097 292 Coils Coil 117 137 - -
Dere13g1097 292 ProSiteProfiles ACT domain profile. 215 292 IPR002912 -
Dere13g1097 292 Coils Coil 164 184 - -
Dere13g1097 292 SUPERFAMILY ACT-like 217 278 IPR045865 -
Dere13g1097 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 186 IPR036638 GO:0046983
Dere13g1097 292 CDD ACT_UUR-ACR-like 217 280 - -
Dere13g1097 292 Pfam Helix-loop-helix DNA-binding domain 129 174 IPR011598 GO:0046983
Dere13g1097 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Dere13g1097 292 SMART finulus 131 180 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1097 Dere-ChrDere13 15144525 15147719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1097 124 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 37.580 7.85e-23 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere13g1097 HLH 1.2e-07 No_clan