Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1081 ATGAACCAAACAGCACCAGAACCAAAGCCACCACCATCGCCTTCTCGAGGGAAATTTTGGCAAGTACGAACCAGTGACAAATTCCTTCCCTTCCTAAATTCTCAAAGTCCAATACCAATTTCTTCGTTCGTCTTTATCTGCATGTACAAAATTCCATTGCCCAAGGAATTTCTCGCTAACAATATGGCGAGGGAGAAGATTCAGATTAGGAAGATCGACAACGCCACGGCGAGGCAGGTGACGTTCTTGAAGCGTCGGAGAGGACTGTTCAAGAAAGCTGAGGAACTCTCAGTTCTTTGCGATGCAGATGTTGCCCTTGTGATCTTCTCCTCTACAGGGAAGCTCTTTGATTACTCCAGCTCAAGTATGAAGGAAATACTAGAAAGGCACTATTTGCACTCCAAGAACCTCTCGAAGCTGAACCAACCGTCTCTTGAGTTGCAGCTAGTTGAGAACAGCAACTACTCGAGTTTGAGCAAGGAAATTGATGAGAAGAGCCATCAACTAAGGCAGATGAGAGGAGAGGATCTTCAAGGATTAGATATTGACGAATTACAGCAACTAGAGATGTGTCTGGAAGCTGGGTTGGGCCGTGTAATGGAAACGAAGGGACAGATGATGATGGATGAGATGAGAGATCTACAAAGAAAGGAAATGCAATTGTTGGAAGAGAACGAGCGCTTAAGATGTCAAGTGACAGAAATGTCTTTTGTGGATAAACAGTGTGGTGCCGAGGAAGGTCACTCATCGGAGTCTGTCGGTAACTTTTGCAGCTACAATGGGCCTCCTCAAGACTATGATGTTAACTCAGACACGTCCCTGAGATTGGGGGAATTTCCAGTGTTGAAACCTTTAGCAGAGAGAAGCAAAGTCTATGGTTTAAATGTGAAGGCTCTGAGCCATGTAGAAGCTAGAGAAAAATTTCACCTGGGTAAACATTGGTATGGCTTTATTCTAGCAATTTTGAAGTCCAATAATCCTGTTTCAGATTTGATACTGGAACAGCTATGA 1011 0.4402 MNQTAPEPKPPPSPSRGKFWQVRTSDKFLPFLNSQSPIPISSFVFICMYKIPLPKEFLANNMAREKIQIRKIDNATARQVTFLKRRRGLFKKAEELSVLCDADVALVIFSSTGKLFDYSSSSMKEILERHYLHSKNLSKLNQPSLELQLVENSNYSSLSKEIDEKSHQLRQMRGEDLQGLDIDELQQLEMCLEAGLGRVMETKGQMMMDEMRDLQRKEMQLLEENERLRCQVTEMSFVDKQCGAEEGHSSESVGNFCSYNGPPQDYDVNSDTSLRLGEFPVLKPLAERSKVYGLNVKALSHVEAREKFHLGKHWYGFILAILKSNNPVSDLILEQL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1081 336 ProSiteProfiles K-box domain profile. 148 238 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere13g1081 336 FunFam Transcription factor, MADS-box 74 144 - -
Dere13g1081 336 PANTHER SERUM RESPONSE FACTOR HOMOLOG 64 226 - -
Dere13g1081 336 Coils Coil 211 231 - -
Dere13g1081 336 Pfam K-box region 152 232 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere13g1081 336 PRINTS MADS domain signature 99 120 IPR002100 GO:0003677|GO:0046983
Dere13g1081 336 PRINTS MADS domain signature 64 84 IPR002100 GO:0003677|GO:0046983
Dere13g1081 336 PRINTS MADS domain signature 84 99 IPR002100 GO:0003677|GO:0046983
Dere13g1081 336 SUPERFAMILY SRF-like 64 146 IPR036879 GO:0003677|GO:0046983
Dere13g1081 336 Coils Coil 155 175 - -
Dere13g1081 336 ProSiteProfiles MADS-box domain profile. 62 122 IPR002100 GO:0003677|GO:0046983
Dere13g1081 336 CDD MADS_MEF2_like 63 136 IPR033896 GO:0000977|GO:0045944
Dere13g1081 336 ProSitePatterns MADS-box domain signature. 64 118 IPR002100 GO:0003677|GO:0046983
Dere13g1081 336 Gene3D - 75 137 IPR036879 GO:0003677|GO:0046983
Dere13g1081 336 SMART madsneu2 62 121 IPR002100 GO:0003677|GO:0046983
Dere13g1081 336 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 71 118 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1081 Dere-ChrDere13 14403492 14409828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1081 62 277 MADS-box Gene Family AT2G22540 64.407 1.04e-97 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere13g1081 K-box 3.7e-18 No_clan