Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1076 ATGTTAGACCCCCTCGAGAGCTTAGATGTTTGTGTGGTGAAGACGAAAGGCAAAACGGACACGTGGAGAACAAAACCGTGGCTGAAACTGAAAGCACGGAATTTCTCGCGCGCATATCTAGTCCCCGAGACAATCGGGCCCCATAGGAATTTCAAACGCCAAGAAAAAGGAGACCGAAAATTGTGCCTCTTCTGCTGTGCATCTCCGGATTGCCTTGACGCTGCTAGTGAAACCTTCTTGGCGATTCATTTTGATCCAGTAATGGCTCTTCCTGGTTCTCTGCAGCTGTCCCATGATTTGGGACATTGCAGGAACCTAGGCTGCAGTAGACAACATATGAGGATAATGTACAGAAGCAAATTACATTTATCAAGTGGAGCTCCCTCATATCATGTTTTGTTCCTGAGAAAGGGTTGCAGGAGAACTCAACTCTTTCGCAATATACATAGACCACTACATACCTTACCCTGCAGAACCCATGTATTCAAGTGCCATTCTTTTCTAGTACCAGGCCAGCCGAGTGAGCTACCTATCGGTAAGGTGGCTGCCACAGCACTGGCAAGGTCCTATAATCTATTACAAAATAGTCCTGTCACAATAAGGTTGATTCCAGCAGTTGGCATTGTCATTTTTGCATTATGGGGTGTTGGCCCATTAATGTATCACACAAGAAAATTGCTTCTTCAGAAGAGCGACAGTAGTTGGAAGAAAAGTAGTACACATTATGTTTTCACTTCTTACCTTCAGCCATTACTGTTATGGACTGGAGCTATACTTATTTGCAGAGAATTAGACCCAGTAATTTTACCTTCAGAAGCAGCTCAGGTTGTTAAGGAACGGCTATTGAATTTTGTACGATCATTGTCAACTGTACTTGCCTTTGCCTATTGTTTATCAAGTGTGATTCAACAAGCACAGAGATTCTTCATGGAGAGTGCTGATGCCTGTGAGACAAGAAATATGGGATTCCAATTTGCAGGCAAGGCTGTTTACTCCGCAGTATGGATTGCTGCCTTTTCGTTGTTCATGGAGTTGCTGGGTTTTTCTACCCAGAAGTGGGTTACTGCAGGAGGTCTTGGGACAGTTTTGCTGACTCTTGCTGGTCGTGAGATATTTACAAACTTCCTTTCAAGTGCGATGATTCATGCAACTCGGCCTTTTGTGGCAAATGAATGGATTCAAACAAAGATTGAAGGATATGAAGTTTCTGGTACTGTGGAGCATGTTGGCTGGTGGTCACCAACAATTATAAGAGGTGAAGATCGTGAAGCTGTTCACATTCCAAACCACAAATTTACAGTGAATGTTGTGCGAAACCTCAGTCAGAAAACACATTGGCGCATCAAGACCCACCTAGCTATTAGTCATTTGGATGTAAATAAGATAAATAACATTGTTGCTGACATGCGGAAAGTCTTGGCTAAAAATCCTCAAGTTGAGCAGCAAAGGCTGCACAGAAGAGTGTTTCTGGACAATATAAATCCTGAAAATCAGGCTCTCTTGATACTGGTGTCTTGTTTTGTCAAGACCTCACATTACGAAGAATATTTGTGTGTTAAGGAAGCTATATTACTGGATCTTCTTAGGGTTATTAGTCATCACCGAGCCCGACTTGCAACACCAGTCCGTACCCTGCAGAAAATTTATAGTGATGCTGACTTGGACAACATTCCATATGTGGATTCTGTATTTAGTGGTACTGGAACAGTATCGAATAGACCAATAATTATAGAACCACCTTACAAAATCAATGCAGATGATATGTCAAAAGGTCGATCAGTGCGCACATCCAGCGAAGGAGATAACAGGACAACCGTGCAAACCAAACCTGACACCAAGGTTGGATCAATGGTGGTGCCAGATGCCGAAGTTGTGATATCTAATTCTGATGCATCCAAGATTGCCGTGACATCCAAACCCAACCCTGAAGTGGGTGAAAATGAGCCAGTAAAAATGGAGTCAAATACCCTAAAGGAAAACCTGGAGGTGCTAGATATGTCTGCTTCGAACTCCAAAGTGAGTGGAGCTGTATCAAATAACCTAACCCGGAAGTATTTCGATGTCAAGCAATTTAATAATGCTGAAAATGGAGGTGGACGTCCTAAGAATATGCCAACGAAACAGCAAGATGAAAGGAAATCAGCTGCACTGCCTCAAACATCCAGGCCTGTCCTTGAAGAGAATATAGTACTTGGCGTAGCGTTGGAGGGATCAAAAAGAACTCTTCCTATTGAGGAGGGGATGAATTCAAAGGAAATGGCTCGAGAGGCAAAAGAAATGGCTGCATGCCAGGGCGGCAATAGATCTTTAACGGCTGAGGATGTGAAAGATAAGTAA 2337 0.4313 MLDPLESLDVCVVKTKGKTDTWRTKPWLKLKARNFSRAYLVPETIGPHRNFKRQEKGDRKLCLFCCASPDCLDAASETFLAIHFDPVMALPGSLQLSHDLGHCRNLGCSRQHMRIMYRSKLHLSSGAPSYHVLFLRKGCRRTQLFRNIHRPLHTLPCRTHVFKCHSFLVPGQPSELPIGKVAATALARSYNLLQNSPVTIRLIPAVGIVIFALWGVGPLMYHTRKLLLQKSDSSWKKSSTHYVFTSYLQPLLLWTGAILICRELDPVILPSEAAQVVKERLLNFVRSLSTVLAFAYCLSSVIQQAQRFFMESADACETRNMGFQFAGKAVYSAVWIAAFSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVANEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHYEEYLCVKEAILLDLLRVISHHRARLATPVRTLQKIYSDADLDNIPYVDSVFSGTGTVSNRPIIIEPPYKINADDMSKGRSVRTSSEGDNRTTVQTKPDTKVGSMVVPDAEVVISNSDASKIAVTSKPNPEVGENEPVKMESNTLKENLEVLDMSASNSKVSGAVSNNLTRKYFDVKQFNNAENGGGRPKNMPTKQQDERKSAALPQTSRPVLEENIVLGVALEGSKRTLPIEEGMNSKEMAREAKEMAACQGGNRSLTAEDVKDK 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1076 778 Gene3D - 387 442 IPR023408 -
Dere13g1076 778 MobiDBLite consensus disorder prediction 759 778 - -
Dere13g1076 778 MobiDBLite consensus disorder prediction 587 609 - -
Dere13g1076 778 MobiDBLite consensus disorder prediction 691 723 - -
Dere13g1076 778 Gene3D - 283 385 - -
Dere13g1076 778 Pfam Mechanosensitive ion channel 328 535 IPR006685 GO:0016020|GO:0055085
Dere13g1076 778 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 88 758 IPR045042 -
Dere13g1076 778 SUPERFAMILY Sm-like ribonucleoproteins 371 441 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1076 Dere-ChrDere13 14339880 14349056 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1076 96 773 Mechanosensitive Ion Channel Family AT5G10490 56.916 0.0 750