Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1065 ATGGCTCGGGCTAGTAACTGGCTATCGTTTTCGTTGTCGCCGATGGAAATGCTGAGGTCTACCAACTCCCAGTTTGCACAATACGACAGCGCGGCTGCTACTTCTCAGTACTTCGTCGATAACTTCTATGCCAATGGCTGGACAAACCCCAAGCCCCAGGTGCTGTACACCGAAGTAGAGCAAAACCAAAGCAAAGATAGCCAAGCAGCACAGAACATGGTGGAATCTTCATATCTCACGGGCTTCATAGAACCCCAGAATCAGAACCAGCCAGTGCCAAAACTGGAGGACTTTCTGGGTGATTCTTCAGCCATGATGCGTTACTCCGATAGCCAAACGGATACCCAAGATTCGTCGACCCTGACCCATATATACGACCACGGGTCTGCCTACTTCAGCGACCAGCAGGATCTAAAAGCAATTGCTGGGTTTCAAGCTTTCTCTACCAACTCGGGCACCGAAGTGGATGACTCGGCCTCCATCGGCAAAACTCAGGCTACCTGTGGCGAGTTCGCGGCTCACTCGATTGAGTCGTCCGGGAACGAGGTGGCCTTCTCAAGTGGTGCGACGAGCACTTTGTCCCTCGGTGTCACACAATGTTCAGATCAGAAAGCCATTGTTCCCGTGGATTCCGATAGCTCAAAGAAGATCGCCGACACTTTTGGCCAGCGAACTTCAATTTACAGAGGAGTCACCAGACACCGATGGACGGGTAGATATGAAGCGCATCTCTGGGATAACAGCTGTAGAAGAGAGGGTCAGGCGAGGAAAGGGCGGCAAGCGAAAGCTGGGTTTGACCACGCCACCCATATTGAATATTGTACTTACATAGATGGTGTGCCCACTGTTAGAGGAAAGCTTATCGACAGTGGGTCTGGTCTCTCTCTGATAAAAATTTTGACCATTCCTTATGCTGATATCGATACTTTTGGCTTTTCCTTTACATGGAACCTGGATTGGTGCATTTCTGGCTGTGGATATGATAAAGAAGAAAAGGCCGCAAGGGCTTATGATTTGGCAGCTCTAAAGTACTGGGGCCCCACTGCTACTACCAACCTCCCTGTTTCGAATTACACAAAGGAATTGGAGGAGATGAAACATGTAACAAAGCAAGAATTTATTGCATCACTGCGAAGGAAAAGTAGCGGTTTTTCCAGGGGAGCTTCTATATACAGGGGTGTAACAAGGCATCACCAACAGGGTAGATGGCAAGCAAGGATTGGCCGTGTCGCAGGGAACAAAGACCTGTACCTTGGAACATTCGCCACTGAAGAGGAAGCAGCAGAGGCATACGATATTGCAGCCATAAAGTTTAGGGGTGTGAATGCTGTGACCAACTTTGAAATGAGCAGATATGATGTTGAAGCCATCATGAAGAGTTCTCTTCCCGTAGGTGGGGCAGCAAAACGCTTGAAGCTTTCCCTTGAATCAGAGCAGAAAGTAACTCTGAACAACAATAACAGTCAGCAACTCCAATGTACGAACATGAGTAGCAGCATCAACTTTTCACCCATTCAGCCTGTTGCTTCCTCTTTCCCTTGTGGAATTCCGTTTGATCCTGCAACTGCATACTATCACCCCAGCCTCTTCCACCATTTTCATCCTTCCAACGCTGGCACTGCGGAGTCTGCTGTATCTAACCATTCTGACATCTTTCTCTGGCCTCAGCATCAATCATATTGA 1683 0.4848 MARASNWLSFSLSPMEMLRSTNSQFAQYDSAAATSQYFVDNFYANGWTNPKPQVLYTEVEQNQSKDSQAAQNMVESSYLTGFIEPQNQNQPVPKLEDFLGDSSAMMRYSDSQTDTQDSSTLTHIYDHGSAYFSDQQDLKAIAGFQAFSTNSGTEVDDSASIGKTQATCGEFAAHSIESSGNEVAFSSGATSTLSLGVTQCSDQKAIVPVDSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQAKAGFDHATHIEYCTYIDGVPTVRGKLIDSGSGLSLIKILTIPYADIDTFGFSFTWNLDWCISGCGYDKEEKAARAYDLAALKYWGPTATTNLPVSNYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGVNAVTNFEMSRYDVEAIMKSSLPVGGAAKRLKLSLESEQKVTLNNNNSQQLQCTNMSSSINFSPIQPVASSFPCGIPFDPATAYYHPSLFHHFHPSNAGTAESAVSNHSDIFLWPQHQSY 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1065 560 CDD AP2 389 450 IPR001471 GO:0003700|GO:0006355
Dere13g1065 560 Gene3D AP2/ERF domain 227 356 IPR036955 GO:0003700|GO:0006355
Dere13g1065 560 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 86 490 - -
Dere13g1065 560 SMART rav1_2 227 360 IPR001471 GO:0003700|GO:0006355
Dere13g1065 560 SMART rav1_2 390 454 IPR001471 GO:0003700|GO:0006355
Dere13g1065 560 SUPERFAMILY DNA-binding domain 327 356 IPR016177 GO:0003677
Dere13g1065 560 Gene3D AP2/ERF domain 390 450 IPR036955 GO:0003700|GO:0006355
Dere13g1065 560 FunFam AP2-like ethylene-responsive transcription factor 389 450 - -
Dere13g1065 560 ProSiteProfiles AP2/ERF domain profile. 227 354 IPR001471 GO:0003700|GO:0006355
Dere13g1065 560 SUPERFAMILY DNA-binding domain 389 450 IPR016177 GO:0003677
Dere13g1065 560 ProSiteProfiles AP2/ERF domain profile. 390 448 IPR001471 GO:0003700|GO:0006355
Dere13g1065 560 Pfam AP2 domain 390 440 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1065 Dere-ChrDere13 14201250 14205645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1065 326 560 AP2-EREBP Transcription Factor Family AT5G65510 69.748 1.25e-95 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere13g1065 AP2 3.9e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1464 09 18774522 18778197 Dere13g1065 13 14201250 14205645 CCT