Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1064 ATGGAATCACGAAGTAACCAAGGAAGAGAGCATACATGCGACGACGAGGCATCACCGAGAGGCGTATTGGAAGGTACGGACTCAGATCGGAGCAGCGGGTGCAGCTCGTGTTCGCCAGAGAAGATGATGGCGTCGGCGTCGGAGAGGCCGCCGCTGGGGAGGGATGGGCACACGCCGCAGTGGAAGGGGGTGATGGACGCGCTGAGGATAAACTCAGTTCGGAGGCTATCGGCGATTCCATTGTTCGCGTCGGGATATATGATATCGAGGAAGAGCTTGAGGAAACTAGCTCGGATTCGAAGCGCAGAAGAAACCATTGATCTTTCATCGTTGCCGACGAAGTCGTCGTGGAAGAACTTCCTTTACACTGAGCTCGCCGCTGCGACTGACGATTTCAGTCCTGAGAACTTGGTGGGGAAAGGAGGGCATGCAGAAGTGTACAAGGGACGCTTACCAGATGGTCAGATCATAGCAGTGAAGAAGCTGGTGAACGAAGAGAAGGACGACGCAGACAACACTGGAGACTTCTTGACAGAGCTGGGAATCATAGCCCACATCAACCACCCAAACGCATGCCATCTGCTTGGCTTCGGAATCGACAAGGGCCTCTTCTTCGTCCTCCACTATGCCCCCCATGGCAGCCTCGCCACTCTCCTCTTCGATTCGGAGAAGCTGGAGTGGAAGATAAGGTTCAAGATAGCCGTTGGAATAGCAGAGGGATTGCAGTATCTCCATCATGAATGCCCCAGACGAATCATTCACAGAGACATCAAGGCCTCCAACATATTGCTCAATGAAAACTATGAACCCGAGATTTCAGATTTTGGATTGGCTAAGTGGCTCCCAGAAAAGTGGGACCATCATGTCGTGTTCCCCATAGAAGGCACATTCGGTTATCTGGCTCCAGAGTATTTCATGCATGGAGTTGTGGATGAGAAGACCGACGTCTTCGCATTTGGGGTTTTGTTACTTGAGATCGTCACAGGTCGTCGTGCCGTTGATTCTGACAGTAGACAAAGTCTCGTGATCTGGGCAAAGACACTACTGGACGCGAACAACATGAAGGAACTAGCAGACCCGAGATTAGAAGATGATTACGATTCCACAGAAATGAAGCGTGCCATGGCTACGGCTTCCTTGTGTGTTCACCACACTCCCTCCAAACGCCCACTCATGAATCGGGTAGTGCAGATGCTGAAGGGGGAAGAGGGACCTGTGGAAATGAGGCAGAAGTCAATGGCCACAAGATCCTTCTTGTTGGATGCTTGTGACCTTGAGGACTACACTTGCTCCAATTACCTCAACGATCTCAGTCGTCACAGGCAACTAATCATGGAGTGA 1341 0.5153 MESRSNQGREHTCDDEASPRGVLEGTDSDRSSGCSSCSPEKMMASASERPPLGRDGHTPQWKGVMDALRINSVRRLSAIPLFASGYMISRKSLRKLARIRSAEETIDLSSLPTKSSWKNFLYTELAAATDDFSPENLVGKGGHAEVYKGRLPDGQIIAVKKLVNEEKDDADNTGDFLTELGIIAHINHPNACHLLGFGIDKGLFFVLHYAPHGSLATLLFDSEKLEWKIRFKIAVGIAEGLQYLHHECPRRIIHRDIKASNILLNENYEPEISDFGLAKWLPEKWDHHVVFPIEGTFGYLAPEYFMHGVVDEKTDVFAFGVLLLEIVTGRRAVDSDSRQSLVIWAKTLLDANNMKELADPRLEDDYDSTEMKRAMATASLCVHHTPSKRPLMNRVVQMLKGEEGPVEMRQKSMATRSFLLDACDLEDYTCSNYLNDLSRHRQLIME 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1064 446 Gene3D Phosphorylase Kinase; domain 1 103 209 - -
Dere13g1064 446 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 109 209 - -
Dere13g1064 446 MobiDBLite consensus disorder prediction 1 23 - -
Dere13g1064 446 SMART serkin_6 132 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1064 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Dere13g1064 446 ProSitePatterns Protein kinases ATP-binding region signature. 138 161 IPR017441 GO:0005524
Dere13g1064 446 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 211 413 - -
Dere13g1064 446 MobiDBLite consensus disorder prediction 28 42 - -
Dere13g1064 446 Pfam Protein kinase domain 135 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1064 446 PANTHER OS08G0249100 PROTEIN 7 418 IPR046958 -
Dere13g1064 446 Gene3D Transferase(Phosphotransferase) domain 1 211 418 - -
Dere13g1064 446 SUPERFAMILY Protein kinase-like (PK-like) 112 399 IPR011009 -
Dere13g1064 446 ProSiteProfiles Protein kinase domain profile. 132 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1064 446 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1064 Dere-ChrDere13 14194178 14200375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1064 118 402 Receptor kinase-like Gene Family AT1G60800 41.837 1.85e-68 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Dere13g1064 Pkinase 6.4e-42 CL0016