Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1040 ATGGACAACAAAGTACACGGCCGGTCATTTGTTAGCCCCCACTATGCTGGGAAGGTGGTAACCATGGCATTCCAAGAAGGGGAGACTTATAGCAAGGTTTTCGGTCCTGTTTTTCTGTACCTTAACTCTGCTCCAAACGACCATGATTCTCAAACTCTCTGGTCTGATGCTGTAAACCAGATGTCCAAGGAAGTCCAAAGCTGGCCGTACGATTTCCCCCAATCAAAACAATTCCTACCGTCAGATCAACGGGGAACAGTCTCCGGAAGATTACTAATTCAAGACCGGTACACTAGAGGCAGTAGATTCATTAATGCCAATAATGCTTATGTTGGTCTAGCTCTGCCTGGAGATGAAGGATCATGGCAGAAAGAAAGCAAGAGCTATCAATTCTGGACCCAAGCTGATAACAGAGGCTTCTTCACTATACCAAATGTTGTGCCAGGAAACTACAACTTGTACGCTTGGGTCCCTGGCTTTCTTGGTGATTACAAATATGACTTTAACATTACTATCACACCAGGAGGCGTCATCGAATTAGGTTCACTAATTTATAAGCCTCCGAGAAATGGTCCTACTATTTGGGAAATTGGGATCCCTGATCGCTCAGTTGCAGAGTTTTATGTGCCAGACCCATATCCTGTGCTCATGAACAATTTATACAAAGGAAAGCCACAACATAAGTTTAGGCAATATGGTTTGTGGCAACGCTACTCTGAATTATATCCAACCAGCAACCTCGTTTACGATGTTGGTGTTGATGATTACACCAAAGATTGGTTTTATGCACAGGTCACCGGAAACCTAGGAAATGACACATTTTGTCCAACGACATGGCAGATAACATTCAAACTCCCATTTGTCATGAGAGGAAATTATACACTAATAATTGCCCTAGCCGCGGCAACTAATTCTCGCTTGGTGGTTCGGTTCAATAATCCTGTGGCTCGTCCTCCCCACTTCGATACCGGGGTAATAGGCGAGGACAATGCCATAGCAAGACATGGAATTCATGGATTATATTGGAGCTATACTGTTGAAGTACCAAGCTATCTCCTTGTGAGAGGAAGGAATACTGTTTATCTCAGACAAGCAAAAGGCATAACACCTTACCAAGGAATTATGCTTAGCCAGAAATACTACTCTCATGGAAAAGGAACATTAATAAATAGGTCCAATTCCTCATGGATATGGAAAGCTATCTCTGAATCAAAAGACATAATTTTCTTTAGACTTCAATGGAGGGTAGGCTCAAGGACCGATATCCCAATCAACCATTCCCTTTGGCATAAGAATTTCTCCTTAACAAGTGTCCCCGACCGCTTGGTTTGGATTGGAAACAGCAAGGGGACATATGTGGTAATGGCAGGATATGAGGCTCTTGAAGGAAACTCTCCTCCCTCTCTACACAGATTGGCTTGA 1422 0.4332 MDNKVHGRSFVSPHYAGKVVTMAFQEGETYSKVFGPVFLYLNSAPNDHDSQTLWSDAVNQMSKEVQSWPYDFPQSKQFLPSDQRGTVSGRLLIQDRYTRGSRFINANNAYVGLALPGDEGSWQKESKSYQFWTQADNRGFFTIPNVVPGNYNLYAWVPGFLGDYKYDFNITITPGGVIELGSLIYKPPRNGPTIWEIGIPDRSVAEFYVPDPYPVLMNNLYKGKPQHKFRQYGLWQRYSELYPTSNLVYDVGVDDYTKDWFYAQVTGNLGNDTFCPTTWQITFKLPFVMRGNYTLIIALAAATNSRLVVRFNNPVARPPHFDTGVIGEDNAIARHGIHGLYWSYTVEVPSYLLVRGRNTVYLRQAKGITPYQGIMLSQKYYSHGKGTLINRSNSSWIWKAISESKDIIFFRLQWRVGSRTDIPINHSLWHKNFSLTSVPDRLVWIGNSKGTYVVMAGYEALEGNSPPSLHRLA 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1040 473 SUPERFAMILY Starch-binding domain-like 79 181 IPR013784 GO:0030246
Dere13g1040 473 Pfam Polysaccharide lyase family 4, domain II 107 178 IPR029413 -
Dere13g1040 473 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 9 376 - -
Dere13g1040 473 Gene3D - 79 180 - -
Dere13g1040 473 Pfam Polysaccharide lyase family 4, domain III 193 376 IPR029411 -
Dere13g1040 473 Gene3D - 190 378 - -
Dere13g1040 473 FunFam Rhamnogalacturonate lyase B 80 180 - -
Dere13g1040 473 CDD RGL4_C 195 375 - -
Dere13g1040 473 SUPERFAMILY Galactose-binding domain-like 190 376 IPR008979 -
Dere13g1040 473 CDD RGL4_M 83 183 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1040 Dere-ChrDere13 13716555 13721042 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1040 10 375 Polysaccharide Lyase AT1G09890 57.337 3.42e-145 427