Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1038 ATGGTTCATGAATCACAATGTCATTCTGATGTAATGAAGTTGCCGGGTTTTGAATTGCAGGTTTCATTCAGAGCTGAGAATGATGAAGGTGGGAGAGATAAGGAAATGGGTTTTCTTGCTGTGGTGGTTTGGAATGACTGTGAATTTCTGCTTCTTGTTGGGAAAAGAGATCTGAGGGCGAGGAACACTGCAAATCCCAGACCTTCTGTTTCTGCAGTGAAGCTGAATGCAGACGATCAGAAGCAAGTGGTGGTTGACAATGGCATCATCCAAGTCACTCTCTCGAGACCCGAGGGTTATGTTATTGGGATATCATATAATGGAATCGACAATGTACTAGAATCTCGTCACGAAGAACTAGACCGAGGGTATTGGGATGTAGTTTGGAACAAACCAGGAAAAAATAGTACTTTTCAGAGAATTCATGGGACAGATTTTTCAATTGTAGCATTGGACGAGAACCAAGCGGAGATTTCGTTTGTAAGAACGTGGACATCTTCCATGGAAGGCACAAATGTCCCCATAAACATAGACAAAAGGTATATTGTGCGAAGAGGGGATTCTGGATTTTACTCTTACGCAATATTCGAGCGGCCCGAAGGGTTTCCAGCAGTGGAGGTTGATCAAATTAGGATTGTCTTCAAGCTCCAGGAAGACAGGTTCCACTATATGGCTATATCTGACTACAGGCAAAGATCCATGCCAACTAAGGAGGATAGAGAAAGTGGACAAATCCTGGCTTATCCTGAAGCTGTCCTCCTAACCCAGCCTTCTAACGACGAATTTAGAGGCGAGGTGGACGACAAATACCAGTATTCCTGTGAGAATAAAGACAACAGAGTGCATGGCTGGATATCCTTTGATTCCGAAGCACCTGTGGGCTTCTGGATGATAACGCCTAGTAATGAATTTCGCAATGCTGGGCCCATCAAGCAAGACCTCACCTCTCATGTGGGCCCAATTACCCTCTCTATGTTTGTGAGCACCCACTATGCTGGGAAGGAGGTAACAATGGCATTTCAAGAAGGAGAGACTTATAAGAAGGTTTTTGGCCCTGTTTTTGTGTATCTAAACTCTGTTTCAAGCAATGATGATCCACAGACGCTTTGGACTGATGCTATAAACAAGATGTCTAAGGAAGCCAGAAGTTGGCCTTATGATTTCCCTCAGTCACAAGATTTTATTCCTCCCACTCAACGTGGAAGCGTGATTGGGAGATTACTAGTTCAAGATCAATATATAAGAGGAGGCAGATTTCTATATGGTAATTCGGCTTATGTTGGTCTAGCTCTGCCTGGTGCTGCTGGATCATGGCAAAGAGAAAGCAAGGGTTATCAATTTTGGACACAAGCTGAGAAGAAGGGCTATTTCATGATAAAAGATGTTGTACCAGGGGACTACAACTTGTTTGCATGGGTTCCTGGCTTTATTGGTGATTACAGATACAATGCCACAATCACCATTACACCAGGGTGTTTAATTAAATTGGACACACTTATATATAGTCCTCCAAGAAATGGTCCCACCCTCTGGGAAATTGGTGTCCCAGATCGCTCAGCTGCAGAATTTTATATACCTGACCCTTACCCTACACTCATGAACAAATTATACAATGAACAACCTAAGGATAGGTTTAGGCAATATGGATTGTGGGAACGTTATGCTGATTTGTATCCAAATAATGATTTGGTTTATACTATTGGTGTTGATACATATGATCAAGATTGGTTCTATGCTCAAGTTACAAGGAACACAGGAAATAAGACATACCAACCGACAACATGGCAGATTATATTTGAACTTCAAAATGACACATTTGTAGGAAATTACACCCTACAACTAGCCTTAGCATCAGCTGCTAATTCTGAGTTGCAGGTTTGGTTCAATGAACAAAGTGGTCTTCCTCTATTTGAAACTGGAAAAATAGGAGGAGACAATGCCATAGCAAGGCATGGAATCCATGGATTGTATTGGTTGTTCAGCATTGACGTTCCAAGCGATCGTTTAGTGCAAGGGAAGAACACTGTCTATTTAAGGCAGTCTTTGGCCGTTAATCCTTTGCAAGGAGTTATGTATGACTACATACGTTTAGAAAGACCTCTAACTCTAAGGACTTGA 2118 0.4216 MVHESQCHSDVMKLPGFELQVSFRAENDEGGRDKEMGFLAVVVWNDCEFLLLVGKRDLRARNTANPRPSVSAVKLNADDQKQVVVDNGIIQVTLSRPEGYVIGISYNGIDNVLESRHEELDRGYWDVVWNKPGKNSTFQRIHGTDFSIVALDENQAEISFVRTWTSSMEGTNVPINIDKRYIVRRGDSGFYSYAIFERPEGFPAVEVDQIRIVFKLQEDRFHYMAISDYRQRSMPTKEDRESGQILAYPEAVLLTQPSNDEFRGEVDDKYQYSCENKDNRVHGWISFDSEAPVGFWMITPSNEFRNAGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMAFQEGETYKKVFGPVFVYLNSVSSNDDPQTLWTDAINKMSKEARSWPYDFPQSQDFIPPTQRGSVIGRLLVQDQYIRGGRFLYGNSAYVGLALPGAAGSWQRESKGYQFWTQAEKKGYFMIKDVVPGDYNLFAWVPGFIGDYRYNATITITPGCLIKLDTLIYSPPRNGPTLWEIGVPDRSAAEFYIPDPYPTLMNKLYNEQPKDRFRQYGLWERYADLYPNNDLVYTIGVDTYDQDWFYAQVTRNTGNKTYQPTTWQIIFELQNDTFVGNYTLQLALASAANSELQVWFNEQSGLPLFETGKIGGDNAIARHGIHGLYWLFSIDVPSDRLVQGKNTVYLRQSLAVNPLQGVMYDYIRLERPLTLRT 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1038 705 SUPERFAMILY Galactose-binding domain-like 506 698 IPR008979 -
Dere13g1038 705 Pfam Polysaccharide lyase family 4, domain III 509 697 IPR029411 -
Dere13g1038 705 SUPERFAMILY Galactose mutarotase-like 79 363 IPR011013 GO:0003824|GO:0005975|GO:0030246
Dere13g1038 705 Gene3D - 507 698 - -
Dere13g1038 705 Gene3D - 75 378 IPR014718 GO:0030246
Dere13g1038 705 Gene3D - 395 494 - -
Dere13g1038 705 SUPERFAMILY Starch-binding domain-like 395 497 IPR013784 GO:0030246
Dere13g1038 705 CDD RGL4_N 76 369 - -
Dere13g1038 705 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 74 700 - -
Dere13g1038 705 CDD RGL4_M 399 499 IPR029413 -
Dere13g1038 705 FunFam Rhamnogalacturonate lyase B 396 496 - -
Dere13g1038 705 CDD RGL4_C 511 698 - -
Dere13g1038 705 Pfam Rhamnogalacturonate lyase family 71 266 IPR010325 -
Dere13g1038 705 Pfam Polysaccharide lyase family 4, domain II 423 495 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1038 Dere-ChrDere13 13691278 13696852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1038 70 700 Polysaccharide Lyase AT1G09890 58.019 0.0 762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1442 09 18479765 18485492 Dere13g1038 13 13691278 13696852 CCT