Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1028 ATGGTTGCCACCTTTTGCTATTCACTTGTTCTTCCTCTGTTATTCTTCCTCGTCATTTCCTTCCCTCTCGTTGCCAACTCACTTAGCTTCCAAAAATCTCAATTTGATTCTGGGGATGCCGACATACTCTACCGGGGATCTGCAGCAACTGAGGTTGGTACTCTTGAATTGAACATCAATGACCAGTACACATGTCAAGTTGGATGGGCCATCTATGCCAAAAGGGTCTTACTTTGGGACTCTAACACAGGACGGCTCACTGACTTCACCTCTCACTACACCTTCACAATCGACACCAGAGATCAAGCTAATTATGGCCATGGACTTTGCTTCTTCCTTGCTCCTTCTGGCGTTGAAATCCCACCAAATTCTGCAGGTGGCTTCCTTGGCCTTTTCAATATCACAACTAGTGTCTCATCCCAGAGCCAAATCGTTCATGTGGAGTTCGACTCTTTCGCAAATAGGGAGTGGGGTGAGACGACGGAACATGTGGGAATCAACAACCACTCTGTCATTTCATCAGTATCCACAGTTTGGAACGCTTCTCTACACAGTGGTGATACCGCAGATGTATGGGTTACCTACAACTCTACAACAAAGAATTTGAGTGTATCGTGGACATACCAAAACACCTCAAATCCTCGAGAGAACACTAGTCTTTATTATCCAATTGATTTATCGAAGGCACTGCCTGAATGGGTTACAGTTGGGTTTTCCGCAGCAACAGGAGCGAGTGGAGAACGTCATACTCTTCTGTCATGGGAGTTCAACTCAACTTTGGATGAAGCAGGGAGGAATACAGATAAGACAAAAATTGTGGTGATTGTAGTTGTAACTGTTTCAGGAGGTGTTTTGATAGCAATTGTATCATATGCATTACTTTGGAGGAAGAAGAAATTGAGAAAGAAAAAAGAAGAAGGCATGAACTTAACATCAATGAATGATGACCTTGAGAGAGAAGCGGGACCAAGAAGGTTCACCTATAAAGAGCTTGCTGTGGCTACCAACAATTTCTCCGGAAACAGGAAATTGGGTCAAGGTGGGTTTGGTGCTGTTTACAGAGGTTATTTTGCTGATCAAGATTTAACAGTTGCTGTGAAGAAAATATCAAAAGGCTCCAGACAAGGAAGAAGAGAGTATGTAACTGAAGTAAAGATCATTAGTCAGCTCAGACATCGAAATCTTGTGCTGCTCATGGGTTGGAGCCATGACAAAGGTGAATTCCTACTTGTTTACGAGTTCATGCCAAATGGTAGCCTTGATGCTCATTTGTTTGGGAAGAAAACCCCTCTTCCATGGAACGTGAGGCATAAGATAGCTCTTGGATTGGCCTCAGGACTGCTCTATCTTCACGAAGAATGGCAGCAATGTGTGGTGCACAGAGATATCAAGTCAAGCAATGTAATGCTAGATTCAACTTTCAATGTTAAACTTGGTGACTTTGGGTTGGCCAAGCTCATGGACCATGAGCTAGGACCCCAAACAACTGGATTAGCTGGAACTGTTGGTTATATGGCTCCAGAATATGTGAATACAGGTAGGGCCAGCAAAGAGTCAGACGTATATAGCTTTGGGGTAGTTGCCTTAGAGATTGCCACAGGAAGAAAGGCAAATGACCTTATGGTGGACAAAGATGGAGAAATGGGATTGACTGAGTGGGTTTGGAATCATTATGGAAGAGCAGAGCTGGTTTTGGCCATGGATGAGAAACTACGAATGGACTGTAATGAGAAACAGGTGGAGTGTTTGATGATTGTAGGGCTGTGGTGTGCTCACCCTGATAAGAATTTGAGACCATCAATAAGGCAAGCAATTCAGGTGCTTAATTTTGAGGCTGCCATGCCAAACCTTCCACCAAAAAAGCCTGTTCCAACATATCATGTTCCTAATACACCAACAATGAGCTCTGGGGAAGCTACCATAACTACAAGCCTTCAAACGGGTCGTTGA 1950 0.4379 MVATFCYSLVLPLLFFLVISFPLVANSLSFQKSQFDSGDADILYRGSAATEVGTLELNINDQYTCQVGWAIYAKRVLLWDSNTGRLTDFTSHYTFTIDTRDQANYGHGLCFFLAPSGVEIPPNSAGGFLGLFNITTSVSSQSQIVHVEFDSFANREWGETTEHVGINNHSVISSVSTVWNASLHSGDTADVWVTYNSTTKNLSVSWTYQNTSNPRENTSLYYPIDLSKALPEWVTVGFSAATGASGERHTLLSWEFNSTLDEAGRNTDKTKIVVIVVVTVSGGVLIAIVSYALLWRKKKLRKKKEEGMNLTSMNDDLEREAGPRRFTYKELAVATNNFSGNRKLGQGGFGAVYRGYFADQDLTVAVKKISKGSRQGRREYVTEVKIISQLRHRNLVLLMGWSHDKGEFLLVYEFMPNGSLDAHLFGKKTPLPWNVRHKIALGLASGLLYLHEEWQQCVVHRDIKSSNVMLDSTFNVKLGDFGLAKLMDHELGPQTTGLAGTVGYMAPEYVNTGRASKESDVYSFGVVALEIATGRKANDLMVDKDGEMGLTEWVWNHYGRAELVLAMDEKLRMDCNEKQVECLMIVGLWCAHPDKNLRPSIRQAIQVLNFEAAMPNLPPKKPVPTYHVPNTPTMSSGEATITTSLQTGR 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1028 649 SMART serkin_6 338 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1028 649 ProSitePatterns Protein kinases ATP-binding region signature. 344 368 IPR017441 GO:0005524
Dere13g1028 649 Gene3D Phosphorylase Kinase; domain 1 323 414 - -
Dere13g1028 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Dere13g1028 649 Pfam Protein kinase domain 341 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1028 649 Gene3D - 25 275 - -
Dere13g1028 649 Coils Coil 300 320 - -
Dere13g1028 649 FunFam L-type lectin-domain containing receptor kinase IX.1 26 269 - -
Dere13g1028 649 MobiDBLite consensus disorder prediction 628 649 - -
Dere13g1028 649 Gene3D Transferase(Phosphotransferase) domain 1 415 629 - -
Dere13g1028 649 Pfam Legume lectin domain 27 267 IPR001220 GO:0030246
Dere13g1028 649 CDD STKc_IRAK 344 609 - -
Dere13g1028 649 ProSiteProfiles Protein kinase domain profile. 338 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1028 649 FunFam Lectin-domain containing receptor kinase A4.3 415 628 - -
Dere13g1028 649 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 263 IPR013320 -
Dere13g1028 649 CDD lectin_legume_LecRK_Arcelin_ConA 28 260 IPR001220 GO:0030246
Dere13g1028 649 FunFam L-type lectin-domain containing receptor kinase IX.1 323 414 - -
Dere13g1028 649 PANTHER - 47 618 - -
Dere13g1028 649 MobiDBLite consensus disorder prediction 627 649 - -
Dere13g1028 649 SUPERFAMILY Protein kinase-like (PK-like) 322 636 IPR011009 -
Dere13g1028 649 ProSitePatterns Legume lectins alpha-chain signature. 230 239 IPR000985 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1028 Dere-ChrDere13 13494407 13496356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1028 13 649 Receptor kinase-like Gene Family AT5G10530 59.784 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Dere13g1028 Pkinase 1.7e-48 CL0016