Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1019 ATGGAGCTTACACAAGTTGGTTTTCTGGAGGAATTGCTAGCTTCAAGAAGAGGAGACACATGGAATACACTGCCAAATGGATTCAATGAGCTATTCCCCGGCAGTGCTTGGAGCTTTGACTCTTTTGATGAGGACCCGCCCATAGCTTCCTTCAATCCACCATTTTCTGCATTCCCAACCCCATTAATAGACCACAGATGTGAATATCCCTTCCCATTTCTTGATGGCTTCACAGGGAATGATGACTCTGCACCACTCCTTCAAGCACAGGAAGATGAAGAGCTTGCGTTTCTGGGTTTTGAAAATCACAGTTCTGAAGAAGCAAATAATAACAATAATAGTAATAATACTTATACTAGTAGCTGCAAAATCGAAGAACAAGCTATGGAAGCTCCAGTGTTCAACATGGGGTTGTGTTGTCGAGAGAGAAATCCCAAATCGAAGAAGCTAGAAGGGCAACCCTCGAAGAATCTCATGGCAGAAAGAAGAAGAAGAAAGCGCCTCAATGATCGCCTGTCTATGCTCAGGTCAATAGTCCCCAAGATCAGCAAGATGGACAGGACATCTATTCTTGGAGACACCATAGATTACATGAAAGAACTTCTGGAAAGGATAGGTGAGTTGCAGGAAGAAATGGAGGAGGAGGAGGGCAAAAATAACCAGATAAGCCTCATAGGCATTTCCAAGGAGGTGAAGCCAAATGAAGGAATGATGAGAAATTCCCCCAGGTTTGAAGTTGAAAGGAGAGACCAGGACACGAGAATCCGTATCTGCTGTGCCACAAAGCCTGGATTGTTACTCTCAACAGTGAATACTTTAGAAGCATTAGGCCTTGGGATACAGCAATGTGTTATAAGCAGCTTTAATGATTTCTCAATGCAAGCATCTTGCTCAGAGGTGGGTGAGCAGAGAGCTTGTATTAGCTCTGAAGAGATTAAGGAAGCACTGTTCAGAAATGCAGGTTATGGTGGGAGATGTCTCTAG 984 0.438 MELTQVGFLEELLASRRGDTWNTLPNGFNELFPGSAWSFDSFDEDPPIASFNPPFSAFPTPLIDHRCEYPFPFLDGFTGNDDSAPLLQAQEDEELAFLGFENHSSEEANNNNNSNNTYTSSCKIEEQAMEAPVFNMGLCCRERNPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGELQEEMEEEEGKNNQISLIGISKEVKPNEGMMRNSPRFEVERRDQDTRIRICCATKPGLLLSTVNTLEALGLGIQQCVISSFNDFSMQASCSEVGEQRACISSEEIKEALFRNAGYGGRCL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1019 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
Dere13g1019 327 Gene3D - 145 219 IPR036638 GO:0046983
Dere13g1019 327 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 89 321 - -
Dere13g1019 327 Coils Coil 198 225 - -
Dere13g1019 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 219 IPR036638 GO:0046983
Dere13g1019 327 Pfam Helix-loop-helix DNA-binding domain 158 201 IPR011598 GO:0046983
Dere13g1019 327 SMART finulus 158 207 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1019 Dere-ChrDere13 13314664 13315910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1019 148 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 69.444 9.55e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere13g1019 HLH 6.8e-10 No_clan