Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1017 ATGATATTTTCACTAGAGGGGGAGGGTGAGATTGATGAAAAGAGTAAGAAGGCCCTTGAGCTTTCCCTCTCTCTTTCTGCTTTTGCCTTCGATGCCTTTGCGTTGCATTTTCCTGCAAAAAAGTTTCTGAAGGATAATCGGTCTTCATCTCTGCTGATCTACCAAAACTTCGTCTGTTTGTCTATTTGGAGTCTGATGTCTCCACCGGTGCTGATTGCTGAAGAGGAAGGGCAGGGCAACACCTCAACAGTAACATCTTCACGATCCTTGGATTGTATCTCCCAGAATGCAACTAGATTAAAAGAACGCAATTACCTAGGGTTGTCAGATTGCTCGTCAGTGGACAGCTCTGCTGTTCGAAGCTTGTCAGATCAGGAAAAGGATAATCTGAATTTGAAGGCTACAGAGTTGAGGCTGGGTCTTCCTGGATCCCAATCTCCTGAAAGGGATCCAGATAGCTCAACAAAACTTGATGAGAAGCCACTGTTTCCTTTGCTTCCTACAAAAGATGGATTCTGCTCATCATCCCTGAAAACTGTGGTTTCTGGCAACAAAAGAGTCTTCTCTGATACCATGGACGAGTTCCATGAGGGGAATTTTCCTGGTAATGCAGGGATAAATGTTTTGCATTCTCCCAGAACTGCTGGAGCTCAGACAACCATAATGAAAGAAATGCCAACTAAGGTGTTACAAGTACGGCCTTGTGCAACTAATGGAACAGGTCATAACCATACGAATGCTTCTGTCAGTGGCAGTGCACCAGCCACTAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCCTTTAGGAAGAACTCATTGGCTAACACTTCAAAGAACAATGAAGAAGTAAATCGAAAACTTGCTCCTGCTGCTCTCTTTGTGAAAGTAAGCATGGATGGAGTTCCCTATCTAAGGAAAATTGATCTTAGAAGTTATACAACATATCAGGATCTGTCTTCTGTCCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGTCAGTGTGGCTCCCATGGAGTTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGTTGAGGGACCTTCTGCATGGTTCAGAATATGTACTCACTTATGAAGATAAAGATGGTGATTGGATGCTTGTAGGGGATGTACCATGGGAGATGTTTATTGACACATGCAAGAGGCTGAAAATCATGAAAGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCTATGGAGAAATCCAAGAGCAGGAGCTAG 1239 0.4407 MIFSLEGEGEIDEKSKKALELSLSLSAFAFDAFALHFPAKKFLKDNRSSSLLIYQNFVCLSIWSLMSPPVLIAEEEGQGNTSTVTSSRSLDCISQNATRLKERNYLGLSDCSSVDSSAVRSLSDQEKDNLNLKATELRLGLPGSQSPERDPDSSTKLDEKPLFPLLPTKDGFCSSSLKTVVSGNKRVFSDTMDEFHEGNFPGNAGINVLHSPRTAGAQTTIMKEMPTKVLQVRPCATNGTGHNHTNASVSGSAPATKAQVVGWPPIRSFRKNSLANTSKNNEEVNRKLAPAALFVKVSMDGVPYLRKIDLRSYTTYQDLSSVLEKMFSCFTLGQCGSHGVPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1017 412 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 130 399 IPR003311 GO:0005634|GO:0006355
Dere13g1017 412 FunFam Auxin-responsive protein 287 404 - -
Dere13g1017 412 MobiDBLite consensus disorder prediction 137 161 - -
Dere13g1017 412 Pfam AUX/IAA family 135 403 IPR033389 -
Dere13g1017 412 SUPERFAMILY CAD & PB1 domains 289 393 - -
Dere13g1017 412 Gene3D - 288 405 - -
Dere13g1017 412 ProSiteProfiles PB1 domain profile. 292 396 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1017 Dere-ChrDere13 13229715 13236770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1017 296 402 B3 DNA Binding Superfamily AT4G23980 28.972 1.76e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere13g1017 AUX_IAA 6.7e-89 CL0072