Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1009 ATGAATCTTTGGACGGACGATAACGCCTCCGTCATGGAGGCTTTCATAAGCTCCGATCTATCAACTCTCTGGCCTCCTGCGCAATCCTCTGCTGCTTCCACGACCACCACTCCTGGACCTGACCCCAACAAAGCTATCTCTCAACCTCAGCCCTCGGTTTGTCTCTTCAATCAGGAGACTCTTCAGCAACGCCTCCAGGCGCTGATTGAGGGAGCCAGAGAGAGCTGGACCTACGCTATCTTCTGGCAGTCCTCGTGTGACTACTTGGGGGCCTCCGTGTTGGGTTGGGGCGACGGGTACTACAAAGGCGAGGAAGATAAAGGAAAAGGGAAGGCCAAAACGACGTCGTCCTCCGCGGCGGAGCAGGAGCACCGCAAGAAGGTTCTTCGAGAGCTCAATTCGCTAATATCCGGGTCGTCTGCCTCCCCGGACGACGCCGTCGACGAAGAAGTGACGGATACAGAGTGGTTCTTTTTGATTTCGATGACGCAGTCGTTTTACAACGGCGGCGGATTGCCAGGGCAGGCGTTATTCAATTCGAGCCCGGTTTGGATCGCTGGTTCGGACCGATTAGCGGCTTCGACGTGCGAGAGGACGAGGCAGGGTCAGGTGTTTGGGCTTCAGACCTTGGTTTGCATACCGTCGGCGAGTGGGGTGGTCGAGTTGGGCTCCACTGAGCTGATTCTTCAGAATTCCGATCTGATGAATAAGGTTAGGGTTTTATTCAATTTCAATGGTCCCGAAGGGAGTTCTTTGTGGCCGTTAAATGGTACAACTACCGATCAAAGTGAGAACGACCCATCGACACTTTGGCTCAACGATCCTTCCAACGGGATGGATATTAGGGATTCGGTGACGACTGTTGCGCCGACTTCCTTACCCAGTTCTAGCAATAGTCATAATAATAATCAGACAATTGGGAAGCCGATACAGTCCGATAACAGAGGTTCCAGTACTTTAACAGAAACGCTAGGTGCTATCCATGTCCAAAACGCAAACCATTGTCACCAACAACGGCAACAGCAACAGTCACAGCAGCAATCGCTGAACCAGGGGTTCTTTTCAAGGGAATTGAACTTTTCGGAATACGGGCTCGACGGAAACGGCGCGAAGAACGTTAACTCGCATTCCTCGAAACCGGAATCGGGTGATATTTTGAATTTCAGGGAGAGCAAGAGGAACGCTTATAGTGGGAATAAGAATTTGTTTTCAGGTCAGTCTCAATTCGTTGCTGAGGAGAAAAAGAGGAGGTCGCCTACGTCTAGGGGTAGCAACGACGAAGGCATGCTTTCCTTCACTTCAGGTGTGATTTTGCCGCCTTCAAATTTGAAGTCCAGCGGTGGTGGCGATTCTGATCATTCTGATCTCGAAGCATCTGTGGTGAAGGAGGTAGACAGTGGCAGAGTGGAAGAACCAGAGAAAAAACCTCGGAAGAGAGGACGGAAGCCTGCGAATGGCAGAGAGGAGCCTTTGAATCATGTTGAAGCCGAAAGGCAGAGGAGAGAGAAGCTCAATCAAAGATTTTATGCGCTTCGTGCTGTGGTTCCAAATGTATCAAAGATGGATAAAGCATCCCTTCTGGGTGATGCCATAACTTACATTACTGAGCTCAAGTCGAAGCTTCAGAATCTAGAATCAGACAAGCACGAATTGCAGAACCAATTGGATTCTGTCGAGAAGGAACTCGAGCTGGCCAGCAAAGGTTCAGGGGCAGCTCCATTGGATGAAGAACCGAAGCTACCCAATCAACATGCTAGCAAGCTTGCTGATTTGGATATCGATGTGAAGATTATCGGTTGGGATGCAATGATTCGGATCCAATGCAGCAAGAAGAACCACCCTGCAGCGAGGTTGATGGCAGCATTGAAGGAGCTAGACCTGGAAGTGCACCACGCGAGCGTGTCGGTGGTGAATGATTTGATGATCCAACAGGCAACGGTGAGGATGGGGAGTCGATTCTACACGCAGGACCAGCTCCGGCTAGCACTTTTGTCCAAAGTTGGCGATGTCCGATAG 2016 0.5069 MNLWTDDNASVMEAFISSDLSTLWPPAQSSAASTTTTPGPDPNKAISQPQPSVCLFNQETLQQRLQALIEGARESWTYAIFWQSSCDYLGASVLGWGDGYYKGEEDKGKGKAKTTSSSAAEQEHRKKVLRELNSLISGSSASPDDAVDEEVTDTEWFFLISMTQSFYNGGGLPGQALFNSSPVWIAGSDRLAASTCERTRQGQVFGLQTLVCIPSASGVVELGSTELILQNSDLMNKVRVLFNFNGPEGSSLWPLNGTTTDQSENDPSTLWLNDPSNGMDIRDSVTTVAPTSLPSSSNSHNNNQTIGKPIQSDNRGSSTLTETLGAIHVQNANHCHQQRQQQQSQQQSLNQGFFSRELNFSEYGLDGNGAKNVNSHSSKPESGDILNFRESKRNAYSGNKNLFSGQSQFVAEEKKRRSPTSRGSNDEGMLSFTSGVILPPSNLKSSGGGDSDHSDLEASVVKEVDSGRVEEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAITYITELKSKLQNLESDKHELQNQLDSVEKELELASKGSGAAPLDEEPKLPNQHASKLADLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALKELDLEVHHASVSVVNDLMIQQATVRMGSRFYTQDQLRLALLSKVGDVR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1009 671 MobiDBLite consensus disorder prediction 423 449 - -
Dere13g1009 671 MobiDBLite consensus disorder prediction 253 318 - -
Dere13g1009 671 PANTHER MYC 49 666 IPR045084 GO:0003700|GO:0006355
Dere13g1009 671 MobiDBLite consensus disorder prediction 365 498 - -
Dere13g1009 671 MobiDBLite consensus disorder prediction 368 382 - -
Dere13g1009 671 MobiDBLite consensus disorder prediction 392 408 - -
Dere13g1009 671 MobiDBLite consensus disorder prediction 455 498 - -
Dere13g1009 671 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 488 537 IPR011598 GO:0046983
Dere13g1009 671 MobiDBLite consensus disorder prediction 26 49 - -
Dere13g1009 671 FunFam Transcription factor bHLH13 481 555 - -
Dere13g1009 671 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 491 558 IPR036638 GO:0046983
Dere13g1009 671 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 61 242 IPR025610 -
Dere13g1009 671 Gene3D - 480 567 IPR036638 GO:0046983
Dere13g1009 671 SMART finulus 494 543 IPR011598 GO:0046983
Dere13g1009 671 Pfam Helix-loop-helix DNA-binding domain 492 537 IPR011598 GO:0046983
Dere13g1009 671 CDD bHLH_AtAIB_like 485 561 - -
Dere13g1009 671 Coils Coil 534 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1009 Dere-ChrDere13 13059891 13061906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1009 1 668 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 55.982 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere13g1009 bHLH-MYC_N 2.1e-54 CL0161