Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1006 ATGGCGTCCGACACCTTCACCGACAAGAACGCCATTTTCAGAAAACTGAAGGCCAAGTCTGATAATAAGATGTGTTTTGATTGTAATGCAAAGAATCCAACTTGGGCGTCCGTCACTTATGGAATCTTTCTCTGCATCGATTGCTCGGCTGTTCATCGCAGCCTTGGGGTGCACATCAGCTTTGTCAGATCTACAAATTTGGATTCATGGACTCCTGAGCAACTGAGAATGATGAGCTTTGGAGGAAACAATCGTGCACAGGTTTTCTTTAAGCAACATGGTTGGACTGATGGTGGTAAAATAGAGGCCAAATATACATCTAGAGCTGCAGATTTGTATAGACAACTTCTTTCAAAGGAAGTAGCCAAAAGTATGGCAGAGGAGGCCGGTTTGCCATCGTCACCTGGTGCTTCTCAGTCTTCACAAGGGCTTAATGGACTTCCTGATGTTAGAACCAAAGAAGTACTAAATGAGAACACTCAGGGGAAGCCAGAAATGCCTGAAAGCAGTGCTTCACCTAGAGCTTCACCTAAAGCTTCACATACAATTGTTTCTAGTACCATAAAGAAGCCTATTGGCACAAAAAAGAATGCCAAGAGTGGGGGCCTTGGTGCCCGGAAGCTTACTAGAAAGCCAAGTGAGTCTCTCTATGAGCAGAAGCCAGAAGAACCGCCTGCTCCAGTTTCTTCCTCGACAAACAGCAGTTTGCCTGCTGGGCCATCCCTGACATCACGATTTGAGTATGTAGACGACATCCAGTCTTCTGACTCGAATGCTGGTGGTGCACATGTGATTAATCATGTGTCACCTCCAAAGTCATCAAGCTTCTTTGCTGATTTTGGAATGGAAAGTGGTTTTCCGAAAAAATATGGGTCAATTTCGTCGAAAGTGCAAATTGAGGAATCTGATGAAGCAAGAAAGAAGTTCTCAAATGCTAAATCTATTTCTTCAGCCCAATTTTTTGGAGATCAGAACAAAGCTGCAAATGTGGATGCTCAAGTTACTTTGTCCAAATTTTCGGGTTCAACTGCTATCTCCAGTGCTGATCTTTTTGGTAACTCAGCAGATAACTCCTCCATTGATGTCACTGCCAACGACCTTCTCAATCGTCTGACATTCCAGGCTCAGCAGGATATATCTTCCCTTAAAAATATCGCTGGAGAGACTGGAAAGAAGCTCAGCTCCCTGGCCTCCAGTTTGATGACGGATCTTCAGGACAGAATTCTTTAA 1230 0.4415 MASDTFTDKNAIFRKLKAKSDNKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLRMMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQLLSKEVAKSMAEEAGLPSSPGASQSSQGLNGLPDVRTKEVLNENTQGKPEMPESSASPRASPKASHTIVSSTIKKPIGTKKNAKSGGLGARKLTRKPSESLYEQKPEEPPAPVSSSTNSSLPAGPSLTSRFEYVDDIQSSDSNAGGAHVINHVSPPKSSSFFADFGMESGFPKKYGSISSKVQIEESDEARKKFSNAKSISSAQFFGDQNKAANVDAQVTLSKFSGSTAISSADLFGNSADNSSIDVTANDLLNRLTFQAQQDISSLKNIAGETGKKLSSLASSLMTDLQDRIL 409
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1006 409 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Dere13g1006 409 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Dere13g1006 409 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Dere13g1006 409 Gene3D Arf GTPase activating protein 1 134 IPR038508 -
Dere13g1006 409 MobiDBLite consensus disorder prediction 133 147 - -
Dere13g1006 409 MobiDBLite consensus disorder prediction 225 244 - -
Dere13g1006 409 SUPERFAMILY ArfGap/RecO-like zinc finger 11 124 IPR037278 -
Dere13g1006 409 MobiDBLite consensus disorder prediction 154 193 - -
Dere13g1006 409 CDD ArfGap_ArfGap2_3_like 8 123 - -
Dere13g1006 409 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Dere13g1006 409 Pfam Putative GTPase activating protein for Arf 12 108 IPR001164 GO:0005096
Dere13g1006 409 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Dere13g1006 409 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 409 - -
Dere13g1006 409 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Dere13g1006 409 MobiDBLite consensus disorder prediction 127 244 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere13g1006 Dere-ChrDere13 13033140 13037074 Dispersed/Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1006 13 91 C2H2 Transcription Factor Family AT4G21160 46.250 7.26e-20 88.2