Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1004 ATGGCGTCCGACACCTTCAGCGATAAGAACGTCGTTTTCAGAAAGCTTAAGGCCAAATCTGATAATAAGATGTGTTTTGATTGTAATGCAAAGAATCCAACTTGGGCGTCCGTCACTTATGGAATTTTTCTCTGCATCGATTGCTCGGCTGTTCATCGAAGTCTTGGGGTGCACATCAGCTTTGTCAGATCTACAAATTTGGATTCATGGACTCCTGAGCAACTGAGAATGATGAGCTTTGGAGGAAACAATCGTGCACAGAGCTGCAGATTTGTATAG 279 0.4337 MASDTFSDKNVVFRKLKAKSDNKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLRMMSFGGNNRAQSCRFV 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1004 92 Gene3D Arf GTPase activating protein 1 90 IPR038508 -
Dere13g1004 92 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Dere13g1004 92 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Dere13g1004 92 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Dere13g1004 92 SUPERFAMILY ArfGap/RecO-like zinc finger 12 88 IPR037278 -
Dere13g1004 92 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 88 IPR001164 GO:0005096
Dere13g1004 92 Pfam Putative GTPase activating protein for Arf 12 88 IPR001164 GO:0005096
Dere13g1004 92 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 88 - -
Dere13g1004 92 SMART arf_gap_3 10 91 IPR001164 GO:0005096
Dere13g1004 92 CDD ArfGap_ArfGap2_3_like 8 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1004 Dere-ChrDere13 13019312 13020855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1004 7 91 C2H2 Transcription Factor Family AT3G07940 48.235 7.64e-23 87.0