Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0995 ATGGCTTCTCTTGGGAACCCGAGAAGTTGGGTTCCATACATGAACAGCAAAGACTGTTCTCAAGGTTTCTGCAGCCTGTACTGCCCACAATGGTGTTACGTAGTGTATCCTCCTCCTCCTCCCTTTGAATTTCCACATGAAAATTCAAGCCCCAATTTTTCCCCTCTCGTTGTAGCAATCATAGGGATCTTGGCCAGTGCTTTTCTTCTTGTAAGCTACTACACCATAATCTCCAAGTACTGTGGCAACACAGAATCTTCGCATACAGAAAATCACGACCCTTCAATTGATGAACTGGAAGACAATCACAACCCTTCCCTCCACGAGCCATGGCACGTGTCACCCAATGGCCTAGACGAAGCTCTGATAAAGTCCATCACAGTTTGTAAGTACAAGAAAGAAGACGGGTTGGTTTCAGTACCAGATTGCTCTGTTTGTCTCAGTGAGTTTCAAGACGACGAAAGTATTAAGCTCTTGCCTAAGTGCAGCCATGCTTTCCACATCCCCTGTATTGACACGTGGCTCAAATCCCACTCCTCTTGTCCTCTCTGTCGCGCTAGTATCTTCACCTTCAACGCTTCTGCTCTTCTAGCTTCTGAATCTGTCATGGAGAACCGAACTTCACAGGAAAATCAACGTGGGAATGAAAATAATGAAGCAGTGGGTGTCGCGGTGGAAGAAGAAAGTCAAGACAGCATGCAGTGTGGTACAGTTCCGAAGCCTACATTGCGTGCTTTGAGCGATCTGGGAAATTTGCAGGGAAGACATAGCGTGATTGAGATTAAAGATGAAGGGTACTATGAGTCCATTAGAAGGTCAGTCTCTATGGAGCATTCACTTCAGAGAGGTGCTTCCATTGGTAATCAAGCTGAAGAAGAGTGCTCTAATGAAGCTGGTCCATCAACGAGATCTCGAGGAGAAAGCAGCAAGTATAACTACAGAAGAAGGGTATTGCAATGTGTGTTAAGTCCGATTGTAATGAAGAGATCGTTCTCGAGTGGGAGATTCTCTCTCAGCAGAGGAAGGCAGGGGATAATCCCTGTATGA 1047 0.4585 MASLGNPRSWVPYMNSKDCSQGFCSLYCPQWCYVVYPPPPPFEFPHENSSPNFSPLVVAIIGILASAFLLVSYYTIISKYCGNTESSHTENHDPSIDELEDNHNPSLHEPWHVSPNGLDEALIKSITVCKYKKEDGLVSVPDCSVCLSEFQDDESIKLLPKCSHAFHIPCIDTWLKSHSSCPLCRASIFTFNASALLASESVMENRTSQENQRGNENNEAVGVAVEEESQDSMQCGTVPKPTLRALSDLGNLQGRHSVIEIKDEGYYESIRRSVSMEHSLQRGASIGNQAEEECSNEAGPSTRSRGESSKYNYRRRVLQCVLSPIVMKRSFSSGRFSLSRGRQGIIPV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0995 348 CDD RING-H2_EL5-like 142 185 - -
Dere13g0995 348 PANTHER RING-H2 FINGER PROTEIN ATL16 41 316 IPR044600 GO:0016567|GO:0016740
Dere13g0995 348 FunFam RING-H2 finger protein ATL54 118 191 - -
Dere13g0995 348 Pfam Ring finger domain 142 185 IPR001841 -
Dere13g0995 348 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Dere13g0995 348 MobiDBLite consensus disorder prediction 278 309 - -
Dere13g0995 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 192 IPR013083 -
Dere13g0995 348 MobiDBLite consensus disorder prediction 278 307 - -
Dere13g0995 348 SMART ring_2 143 184 IPR001841 -
Dere13g0995 348 SUPERFAMILY RING/U-box 123 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0995 Dere-ChrDere13 12877551 12878597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0995 1 241 C3H Transcription Factor Family AT3G03550 45.594 1.22e-69 220