Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0994 ATGATGGATTACAGTCGTGAAGGAAACGTCGTCCAAATCATCACCGGAGGAGGAAGTGATAATTGGTCCAATGACCAAGCCCTCTGGGCAACCGAAGAAGATTACCGATTCTGCGATCCCGACACTCCGTCGAACTCGAATGGCTCGGGAAGCGAACCCCCAAACAAGAAATCGCGGAATTTCCAGGACGTGAATCGGTCCAAGGCAATAGGAAAGATGTTCTTCAAAACCAAACTGTGCTGCAAATTCCGTACCGGCACGTGTCCCTATATTTCCAACTGCAACTTCGCTCACAGCATCGAAGAGCTTCGCCGGCCGCCTCCGAATTGGCAAGAAATCGTGATGGCCCACGAGGAGGAGAAAACGACGACGTCGGAGCCGAGGGAGGAGTTTCAGATTCCTTCGATAGTGACTTCGGGGTTTGATGGGGAGACGCAGAGGTCATATAAAGGAAGACACTGCAAGAAGTTTTACACAGAAGAAGGGTGTCCATATGGAGATAGCTGTACCTTTCTTCATGATGAGCAATCGAAGAATCGAGAGAGTGTGGCTATAAGTTTAGGACCTGGGTACAATGGTGGTGGTGCTGGGAATGGACCCAATTCTAAGCCATCGAACTGGAAGACGAGGATTTGCAATAAGTGGGAGATGACAGGGTACTGCCCCTTTGGGAACAAATGCCATTTTGCTCACGGTTCTGCAGAATTGCACCGATATGGAGGTGGGCTTGTGGAGACAGAAAACAGAGACACTGCATCTGCTGCTGCTGGTCCAGACGCAAAGCAGGGAGGGGTGCCTTTGAAATCTGCAGCAGATACTGTGGTTGCTTCAGTGACTCCAGTGGCTCATTCGGATGTTTATCATATGGGACTTCCTTCACAAAGGTCTTCCTCCATTGTGATGCAGAGGCCAGGACAGAGAGCTCACCAGAAGTGGAAAGGTCCAGACAAAATCAGTAGAATATATGGTGACTGGATTGATGACATCGAATAG 993 0.4955 MMDYSREGNVVQIITGGGSDNWSNDQALWATEEDYRFCDPDTPSNSNGSGSEPPNKKSRNFQDVNRSKAIGKMFFKTKLCCKFRTGTCPYISNCNFAHSIEELRRPPPNWQEIVMAHEEEKTTTSEPREEFQIPSIVTSGFDGETQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGYNGGGAGNGPNSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGSAELHRYGGGLVETENRDTASAAAGPDAKQGGVPLKSAADTVVASVTPVAHSDVYHMGLPSQRSSSIVMQRPGQRAHQKWKGPDKISRIYGDWIDDIE 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0994 330 FunFam zinc finger CCCH domain-containing protein 15-like 200 239 - -
Dere13g0994 330 SUPERFAMILY CCCH zinc finger 204 237 IPR036855 GO:0046872
Dere13g0994 330 SUPERFAMILY CCCH zinc finger 72 105 IPR036855 GO:0046872
Dere13g0994 330 SUPERFAMILY CCCH zinc finger 147 176 IPR036855 GO:0046872
Dere13g0994 330 ProSiteProfiles Zinc finger C3H1-type profile. 148 176 IPR000571 GO:0046872
Dere13g0994 330 FunFam Zinc finger CCCH domain-containing protein 70 106 - -
Dere13g0994 330 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 75 99 IPR000571 GO:0046872
Dere13g0994 330 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 207 232 IPR000571 GO:0046872
Dere13g0994 330 MobiDBLite consensus disorder prediction 40 60 - -
Dere13g0994 330 PANTHER CCCH ZINC FINGER/TIS11-RELATED 198 249 IPR045877 GO:0003729
Dere13g0994 330 FunFam Zinc finger, CCCH-type 142 180 - -
Dere13g0994 330 ProSiteProfiles Zinc finger C3H1-type profile. 206 234 IPR000571 GO:0046872
Dere13g0994 330 Gene3D - 70 105 - -
Dere13g0994 330 Gene3D - 200 238 - -
Dere13g0994 330 Gene3D - 142 191 - -
Dere13g0994 330 Pfam CCCH-type zinc finger 152 174 IPR041367 -
Dere13g0994 330 MobiDBLite consensus disorder prediction 38 63 - -
Dere13g0994 330 ProSiteProfiles Zinc finger C3H1-type profile. 74 101 IPR000571 GO:0046872
Dere13g0994 330 SMART c3hfinal6 206 233 IPR000571 GO:0046872
Dere13g0994 330 SMART c3hfinal6 74 100 IPR000571 GO:0046872
Dere13g0994 330 SMART c3hfinal6 148 175 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0994 Dere-ChrDere13 12869947 12871746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0994 208 236 C3H Transcription Factor Family AT1G68200 62.069 4.48e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere13g0994 zf-CCCH 1.1e-10 CL0537