Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0987 ATGGGTAGGCCACCGTGTTGTGAGGAGAGTGGTGTGAAGAGAGGGCCATGGACACCTGAAGAAGATGAGAAACTTATTCATTATATCAGCAAACATGGGAGTAAAAATTGGAGAACAGTTCCAAAGCAAGCAGGCCTCAACAGGTGTGGCAAGAGCTGCAGACTAAGGTGGACCAACTATCTTAGGCCTGATATCAAGAGAGGCAAATTCACTGAAGAAGAGGAGCGATTGATCATTAACCTTCATTCTGTTCTTGGAAACAAGTGGTCAAAGATTGCAACCCATCTTCCAAGGCGAACTGATAATGAGATAAAAAACTTCTGGAATACCAATATAAGGAAGAAGCTTCTCCGGATGGGAATTGACCCAGAAACCCACAAGCCAAGAACTGACTTGAAACACATCATGAATCTCTCGCAGTTGCTTGGCATGTCTAATAATAACTTGATGAGCCCTTGGAGCCAGGCTGCTCTTGGTTTACAGCAACCTGATTCAACTCAGTTAGCCCAAATCCAACTCCTGCAAAATTTGCTGCTGCTTATTAATGGCAATTCATCATTTGCCAATAATATGCAGACTTGTACTCCCTCCCTCTGGGGATATCAGAGCTTGATGAATAACCAATTGGAAACATATGTAAATGGGACAAACAGTACCCTCCTCAACATCAAAGAGCCTTTCTTGAGAGATCAAGAAGTATATGCAGGCGCTGCTCTATTTCCTCATGCAACAAAGGAATCACTTCATGATACTTCAGAGTCATGGACCGACGCCGACATAGAAGGGGCATCAAATCAAGAAGTTTTTGGTATCAATAAGGATACTACTACTAGAAGTAATTCATCACATGATATAAATCGAGCAGAAAACCCACTTCCTGCAGTAGTTTCAGCTAGCTTCAATGAAGTGGAGAGTAGATCTAAATCTAATATGGATGAAATGCTCATCCAGTCACCTTCATCAACAGTCTTTGAGGCTTGGGAGAAGCTTTTGGAAGATGATGCTAGCGATTCCTACTGGAAAGAACTTCTCGAGTAG 1038 0.4249 MGRPPCCEESGVKRGPWTPEEDEKLIHYISKHGSKNWRTVPKQAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEEERLIINLHSVLGNKWSKIATHLPRRTDNEIKNFWNTNIRKKLLRMGIDPETHKPRTDLKHIMNLSQLLGMSNNNLMSPWSQAALGLQQPDSTQLAQIQLLQNLLLLINGNSSFANNMQTCTPSLWGYQSLMNNQLETYVNGTNSTLLNIKEPFLRDQEVYAGAALFPHATKESLHDTSESWTDADIEGASNQEVFGINKDTTTRSNSSHDINRAENPLPAVVSASFNEVESRSKSNMDEMLIQSPSSTVFEAWEKLLEDDASDSYWKELLE 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0987 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Dere13g0987 345 CDD SANT 69 112 IPR001005 -
Dere13g0987 345 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere13g0987 345 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Dere13g0987 345 CDD SANT 16 61 IPR001005 -
Dere13g0987 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Dere13g0987 345 Gene3D - 14 66 - -
Dere13g0987 345 PANTHER F14D16.11-RELATED 1 316 - -
Dere13g0987 345 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dere13g0987 345 Gene3D - 68 141 - -
Dere13g0987 345 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dere13g0987 345 MobiDBLite consensus disorder prediction 266 288 - -
Dere13g0987 345 FunFam MYB-related transcription factor 13 66 - -
Dere13g0987 345 FunFam Transcription factor MYB39 69 130 - -
Dere13g0987 345 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dere13g0987 345 MobiDBLite consensus disorder prediction 268 287 - -
Dere13g0987 345 SMART sant 13 63 IPR001005 -
Dere13g0987 345 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0987 Dere-ChrDere13 12726201 12727350 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0987 1 345 MYB Transcription Factor Family AT5G16770 42.778 1.43e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere13g0987 Myb_DNA-binding 1.1e-17 CL0123