Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0985 ATGGGTAGGCCACCGTGTTGTGAGGAGAGTACTGGTGTGAAGAGAGGGCCATGGACACCTGAAGAAGATGAGAAGCTTATTCATTATATCAGCAAACATGGGAGTGGAAATTGGAGAACAGTCCCAAAGCAAGCAGGCCTCAACAGGTGTAGCAAGAGCTGCAGACTAAGGTGGACCAACTATCTTAGGCCTGATATCAAGAGAGGCAAATTCACTGAAGAAGAGGAGCGATTGATCATCAACCTTCATTCTGTTCTAGGAAACAAGTGGTCAAAGATTGCTACTAATCTTCCAGGGCGAACTGACAATGAGATAAAGAACTTCTGGAACACCCAATTAAGAAAGAAGCTTCTCCAGAAGGGTATTGACCTAGAAACCCACAAGCCAAGGACTGACTTTAAACACATCATGAATCTCTCGAAGTTGCTTGGCATGTCTAATAATAACGTTATGAGCTCTTGGGGCCGTTCAAGTCTGGGTTTACAGCAACCAGATTTGGCTCAGTTAACCCAAATCCAACTATTGCAAAATCTGTTGCAGCTAATAAATAGCCATTTATTTGTTAATAATATGCAGAATCCTCTCTCTGATCTCTTGGGCAATTGCAACCTAATGAATAACCCATTGGAAGCATATGTAAATGGGACAAATAGTACGCTCCTCAACAACAAAGAGCCTTTCTTGAGATACCATGAAGCAAACCCTGATTTTTTCCCTCCAGCACAAAGTGACTCATGTCAGCATGTTTCAGAATCATGGACAGACCTAGAAGGGACATCAAGTGAAACAAATTTTGGTATTGATAATAGTATTAGTTGCAGCACTTCATCACAAGAAGTCAATGAAGCTGAAAACCCACTTCCTGCAGCAGTAGTTTTAGCCAGCTTCAACCCAATGGAGAATAGCTCTAATAGAGATAAAATGTCCACCCAGTCACCTTCATCGCCTATCTTTGGTACTTTGGAGAAGTTCATGGAAGATGATACAAGCGATTCCTACTGGAAAGAACTTTTAGACTTGACATCCAATTCCGAAACGCCGGTTTCGTGGTAG 1053 0.4217 MGRPPCCEESTGVKRGPWTPEEDEKLIHYISKHGSGNWRTVPKQAGLNRCSKSCRLRWTNYLRPDIKRGKFTEEEERLIINLHSVLGNKWSKIATNLPGRTDNEIKNFWNTQLRKKLLQKGIDLETHKPRTDFKHIMNLSKLLGMSNNNVMSSWGRSSLGLQQPDLAQLTQIQLLQNLLQLINSHLFVNNMQNPLSDLLGNCNLMNNPLEAYVNGTNSTLLNNKEPFLRYHEANPDFFPPAQSDSCQHVSESWTDLEGTSSETNFGIDNSISCSTSSQEVNEAENPLPAAVVLASFNPMENSSNRDKMSTQSPSSPIFGTLEKFMEDDTSDSYWKELLDLTSNSETPVSW 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0985 350 CDD SANT 70 111 IPR001005 -
Dere13g0985 350 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Dere13g0985 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Dere13g0985 350 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 300 - -
Dere13g0985 350 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Dere13g0985 350 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Dere13g0985 350 Gene3D - 15 67 - -
Dere13g0985 350 FunFam MYB-related transcription factor 14 67 - -
Dere13g0985 350 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Dere13g0985 350 Gene3D - 69 138 - -
Dere13g0985 350 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Dere13g0985 350 SMART sant 14 64 IPR001005 -
Dere13g0985 350 SMART sant 67 115 IPR001005 -
Dere13g0985 350 FunFam Transcription factor MYB39 70 131 - -
Dere13g0985 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Dere13g0985 350 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0985 Dere-ChrDere13 12694890 12696206 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0985 1 339 MYB Transcription Factor Family AT4G17785 40.997 2.03e-81 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere13g0985 Myb_DNA-binding 1.4e-17 CL0123