Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0984 ATGGGCATGCGGGCTCAGTGCTCTGCTTCAAAGGTTGCCTTCTCATTCTCGCCACCATGTTGTGAGGAGAGTGGTGTGAAGAGAGGGCCATGGGCACCTGAAGAAGATCAGAAGCTTATTCATTATATCAGCAAACATGGGAGTGGAAATTGGAGAACAGTCCCAAAGCAAGCAGGCCTCAAGAGCTGTGGCAAGAGCTGCAGACTAAGGTGGTCAAAGATTGCTACTCATCTTCCAGGGCGAACTGACAACGAGATAAAGAATTTCTGGAACACGCATATAAGGAAGAAGCTTTTCCAGATGGGTATTGACCCAGAGACCCACAAGCCAAGAACTGACTTGAAAAACGTCATGAATCTCTCGCAGTGGCTTGGCGCGTCTAATAATAACGTTATGAGCTCTTGGGGCCATTCAGCTCTTGGTTTACAGCAATCAGATATGGCTCAGTTAGTCCAAATCCAATTGATGCAAAATCTGTTACAGCTAATAAATAGCAATTTGTTTGCTAATATTAATATGCAGCGTCCTCTCTGTGATCTCTTGGGCAATCGCAACCTAATGAATAGCCCTAGACTTGACAACCACTTCCGAATCGCTGATTTCGTGGTAGAGGATTTCAAAGTCTATGTAGATGATCATGGACCCTTCACACATGAGACACAATATATCGATTCATTATTTGTTCATTCATCATGA 696 0.4411 MGMRAQCSASKVAFSFSPPCCEESGVKRGPWAPEEDQKLIHYISKHGSGNWRTVPKQAGLKSCGKSCRLRWSKIATHLPGRTDNEIKNFWNTHIRKKLFQMGIDPETHKPRTDLKNVMNLSQWLGASNNNVMSSWGHSALGLQQSDMAQLVQIQLMQNLLQLINSNLFANINMQRPLCDLLGNRNLMNSPRLDNHFRIADFVVEDFKVYVDDHGPFTHETQYIDSLFVHSS 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0984 231 SUPERFAMILY Homeodomain-like 28 95 IPR009057 -
Dere13g0984 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 98 IPR017930 -
Dere13g0984 231 SMART sant 27 96 IPR001005 -
Dere13g0984 231 Gene3D - 26 71 - -
Dere13g0984 231 Gene3D - 72 99 - -
Dere13g0984 231 FunFam MYB-related transcription factor 27 75 - -
Dere13g0984 231 Pfam Myb-like DNA-binding domain 28 72 IPR001005 -
Dere13g0984 231 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 18 71 - -
Dere13g0984 231 CDD SANT 30 94 IPR001005 -
Dere13g0984 231 ProSiteProfiles Myb-like domain profile. 23 94 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0984 Dere-ChrDere13 12687072 12689719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0984 19 225 MYB Transcription Factor Family AT5G16770 39.837 4.95e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere13g0984 Myb_DNA-binding 7.8e-12 CL0123