Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0978 ATGAGCTTTCTGGATATTGAAGCTGGCCGGCCTTTCGCTTCCAGGCGAAACCTCATCAGTGCCAACCAGGATCCCACGCAGGCTGTGGCCTCCGGTATCTTTCAGATCAACACCGCCGTTTCCACGTTTCAGAGGCTCGTCAATACCCTCGGAACCCCTAAAGACACGCCCGAGCTGCGCGACAAATTGCACAAGGCAAGACTACATATTGGGCAATTGGTGAAGGATACATCAGCTAAACTCAAGCAGGCTAGTGAAATAGATCACCATGCTGAAGTTAGTGCAAGTAAGAAGATAGCAGATGCTAAACTTGCAAAAGATTTTCAGGCAGTTTTGAAAGAATTTCAGAAGGCACAGCAGCTTGCAGCCACAAGGGAAACAGCCTACACTCCTTTTGTTCCACAAGCAGTTCTTCCTTCCAGTGAGATAGATGTTAGTTCTGATAAGACTCCAGAAGAGCGTGCTCTTCTTGTGGAATCCAGAAGGCAGGAGGTACTATTGTTGGATAATGAGATTGCCTTCAATGAGGCTATAATTGAGGAACGTGAACATGGCATTCATGAAATCCAACAGCAAATTGGTGAAGTAAATGAGATTTTTAAAGATCTTGCTGTGCTTGTTCATGAGCAAGGAGTCATGATTGATGATATTGGATCCAATATTGAGAACTCACGTGCAGCAACTTCAGAAGCGAAATCTCAACTTGGGAAAGCGGCAAGGACCCAAAAATCAAATTCATCTCTGACGTGCTTGCTCTTGGTGATATTTGGAGTTGTGCTTCTCATCGTGATCATAGTTCTTGCTGCTTAG 810 0.4506 MSFLDIEAGRPFASRRNLISANQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELRDKLHKARLHIGQLVKDTSAKLKQASEIDHHAEVSASKKIADAKLAKDFQAVLKEFQKAQQLAATRETAYTPFVPQAVLPSSEIDVSSDKTPEERALLVESRRQEVLLLDNEIAFNEAIIEEREHGIHEIQQQIGEVNEIFKDLAVLVHEQGVMIDDIGSNIENSRAATSEAKSQLGKAARTQKSNSSLTCLLLVIFGVVLLIVIIVLAA 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0978 269 CDD SNARE_Qa 179 237 - -
Dere13g0978 269 Gene3D - 20 133 - -
Dere13g0978 269 PANTHER SYNTAXIN 26 260 IPR045242 -
Dere13g0978 269 FunFam Syntaxin-22 like 169 269 - -
Dere13g0978 269 Pfam SNARE domain 212 264 IPR000727 -
Dere13g0978 269 CDD SynN 23 137 IPR006011 GO:0016020
Dere13g0978 269 SUPERFAMILY t-snare proteins 20 231 IPR010989 GO:0016020|GO:0016192
Dere13g0978 269 Gene3D - 170 269 - -
Dere13g0978 269 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 176 238 IPR000727 -
Dere13g0978 269 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Dere13g0978 269 ProSitePatterns Syntaxin / epimorphin family signature. 182 221 IPR006012 GO:0005484|GO:0006886|GO:0016020
Dere13g0978 269 SMART SynN_4 13 127 IPR006011 GO:0016020
Dere13g0978 269 FunFam Syntaxin-22 like 20 133 - -
Dere13g0978 269 SMART tSNARE_6 171 238 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0978 Dere-ChrDere13 12612561 12615773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0978 1 257 SNARE and Associated Proteins AT5G46860 77.432 1.87e-143 401