Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0972 ATGCCACGTGTATCTCCCGCTCAAAACTGTACGCCACGTGTCGACTCCAACTTGTTCCTTGGAATTACCTTGGGTCACGCATCGTGAGAGAATGGACGATTGGATTTCAACCTTGTGTGGACAATCAAACACCGTTTTGGTACACGTGATAATTCCATCTTTCCTGCTACTGACTTTTCTCTGACCGAAGGCGTTGGATCTCTCTGTGGCCTGATTTCAGCCTTGTGCTCGGCGTTCTACGAGAATGTGGCGAGTCTGGTTGTTGCTAAAGGCTCGCTTTTAATCTGTAAAATCCAGGATCGTGATCTAGGGTTTGGCTCTGGGATTTGGATTCGGTTTTGTGATTTCTTGACCAAGAGAGCGAAGACGGAGGCCTACAGGGAGCGACCTCGGAATGAAATGGTGGAAGGAAGGGTTTGTCTGCCCAGGGGAGCTAGAAATGTGTTAGAATCTTTGAAGCATAAAAGGCTTCAGCGGGCAAAATCTGTTACTGCCACCGAAACCAGTGTCGCTAATATGATGACCAGAAGTGGAGGAGATGCTTTAAGAGCTTCGTCATCATGTGGTGTGAGATTGCATGGTTATGCAGATGCCTTTTCCAAGCGGAAGGTGGATAAGTTTGACATGGGTGATCTTGAATGGACTGAAAAAATTCCAGAGTGTCCTGTATATTCCCCAACAAAAGAGGAATTTGAGGACCCTTTGGTTTATTTGCAAAAAATAACTCCCGAGGCTTCAAAATATGGTATATGCAAGATTATTTCTCCTTTAAGTGCTTCTGTTCCCGCTGGAGTTGTTTTGATGAAGGAGAAAGCCGGATTTAAGTTTGCGACCAGAGTACAGCCACTTCGCCTTGCTGAGTGGGATACTGAAGACAAAGTCACATTTTTCATGAGTGGAAGAAATTATACATTTCGCGATTTTGAAAAAATGGCGAACAAGGTTTTTGCACGTAGATACTGCAGTGCGGGATGTCTTCCTGCCACATATATGGAAAAAGAGTTTTGGAACGAAATTAGCTACGGAAATATGGTATCTGTCGAATATGCATGTGATGTTGATGGTAGTGCTTTTTCCTTGTCTCCCACCGATCAGCTTGGCAGCAGCAAATGGAATTTGAAGAAGCTTTCACGGTTGCCTAAGTCCATTTTGCGCCTCTTGGAAACAGTAATTCCGGGAGTAACCGAACCCATGCTATACATAGGTATGCTGTTTAGTATGTTCGCTTGGCATGTGGAGGATCACTATTTGTACAGTATTAATTATCATCACTGTGGGGCATCAAAAACTTGGTACGGCATTCCAGGTCATGCAGCTTCAGAATTTGAAAGGGTGGTGAGAGAACATGTGTATACTAATGATATTCTCTCAAGTGAAGGGGAAGTTGGAGCCTTTGATGTTCTCCTGGGGAAAACAACGCTGTTTCCTCCAAATATTTTGTTGGAACATGAAGTCCCTGTCTACAAAGCTGTTCAACAGCCGGGGGAGTTTATAGTTACCTTCCCTAGAGCATATCATGCTGGTTTTAGTCATGGTTTTAACTGTGGAGAAGCTGTAAATTTTGCTATTGGTGATTGGTTTCCTTTAGGGGCCATTGCTAGCAGGCGATATGCCCATCTTAACAGGGTTCCTCTGCTACCTCATGAAGAACTTTTATGCAAAGAAGCAATGCTCCTCTATACAACCTTAGAACTTGAAGATTCAGACTTTCCTTCTGCAGACTTGATGTCTCATAGTAGCATCAAGATCTCTTTCGTTAATCTGATACGATTCCAGCATTGTGCTCGCTGGTTCTTAATGAAATCACAGTCGTTAAATAGTGTTTCTTCACACTCCCATGGCACAATTCTCTGTGGTCTCTGCAAACGTGACTGTTATGTAGCTTATGTTGACTGTGAATGTCACATGCATCCAGTGTGCCTTCGCCATGATATCAAATCTCTTGACTTCACCTGCGGGAGCAAACACACTCTTTACTTGAGGGAGGATATTCAAGATATGGAAGCTGCGGCCAAGAGATTTGAGCAAGAAGATGGAATATTGGATGAGATAATTAAGCAGACCAAGGCTGACAATAACATTTATTCATATCCCTTGTCAAATATGTTTCAGAGGGCTGAAGCAGATGGATATACTCCTTATTGTGAGTTAAAATTTGATCCTGTAATTATGAGACATTGCTCAGAATCAGAATATCATGAACTCGTGTCGGAGGTTTCTTTCTTTTCTGCTGCATCCACTCTTTGCTCTCTTTCAGATCCTCTTGAGAGTTCTTCTGCTCCTAAAAATGATGAGGGGCGTGCAAACCTAAATCTAGGCGTTGTTAATTCTGAAGACTTTTGTGAAAGAGTGTCCAATAGTGTATGTGAATCTTCAGTATCCCCTGCACGATATCAGGAAAGCTCAAGTAAACCTCGGGGTGATCTATATAGAATGGAGATGAAACCTATTGTGGATAATGAAAGTGATGATTCTGATTCAGGGATATTTAGAGTAAAGCGGCCTTCTTCTCTGAAGGCAGAGAGGAGAAATGGGAATGATGGGATGTCTTCAAAACATTCTGACCACCAGGGACCAAAACGATTGAAGAAAAACCTTCATGAAGGAAGAAGTGGGCAGCCAATGGATTGCTGCAAAACCAGTGAATCAGGTTACAAAATCAGTCACTCTGCAAATCATAAAGTTGACAGCGAAAGTTCCACGAGGGAAAGATATCCAAAGGGTAATAACATTCCCATTTCCATAAGATACAAGAAGCTAGGAAATGAGAACTTATGTAGACAACGAGATCACCACAAGAAAGATTGGTCGCAACAGAGTATTATGGAACCATCTCCCACAGAGATTGGACCAAAGCGCCTTAAAGTCCGAGGCCCTTCATTTCTGGGCTCATAG 2895 0.429 MPRVSPAQNCTPRVDSNLFLGITLGHASXENGRLDFNLVWTIKHRFGTRDNSIFPATDFSLTEGVGSLCGLISALCSAFYENVASLVVAKGSLLICKIQDRDLGFGSGIWIRFCDFLTKRAKTEAYRERPRNEMVEGRVCLPRGARNVLESLKHKRLQRAKSVTATETSVANMMTRSGGDALRASSSCGVRLHGYADAFSKRKVDKFDMGDLEWTEKIPECPVYSPTKEEFEDPLVYLQKITPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFATRVQPLRLAEWDTEDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPATYMEKEFWNEISYGNMVSVEYACDVDGSAFSLSPTDQLGSSKWNLKKLSRLPKSILRLLETVIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAASEFERVVREHVYTNDILSSEGEVGAFDVLLGKTTLFPPNILLEHEVPVYKAVQQPGEFIVTFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYAHLNRVPLLPHEELLCKEAMLLYTTLELEDSDFPSADLMSHSSIKISFVNLIRFQHCARWFLMKSQSLNSVSSHSHGTILCGLCKRDCYVAYVDCECHMHPVCLRHDIKSLDFTCGSKHTLYLREDIQDMEAAAKRFEQEDGILDEIIKQTKADNNIYSYPLSNMFQRAEADGYTPYCELKFDPVIMRHCSESEYHELVSEVSFFSAASTLCSLSDPLESSSAPKNDEGRANLNLGVVNSEDFCERVSNSVCESSVSPARYQESSSKPRGDLYRMEMKPIVDNESDDSDSGIFRVKRPSSLKAERRNGNDGMSSKHSDHQGPKRLKKNLHEGRSGQPMDCCKTSESGYKISHSANHKVDSESSTRERYPKGNNIPISIRYKKLGNENLCRQRDHHKKDWSQQSIMEPSPTEIGPKRLKVRGPSFLGS 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0972 964 ProSiteProfiles JmjC domain profile. 368 538 IPR003347 -
Dere13g0972 964 PANTHER LYSINE-SPECIFIC DEMETHYLASE 213 896 - -
Dere13g0972 964 Pfam C5HC2 zinc finger 618 669 IPR004198 -
Dere13g0972 964 Gene3D Cupin 221 579 - -
Dere13g0972 964 MobiDBLite consensus disorder prediction 889 903 - -
Dere13g0972 964 SMART JmjN_1 220 261 IPR003349 -
Dere13g0972 964 MobiDBLite consensus disorder prediction 924 964 - -
Dere13g0972 964 SUPERFAMILY Clavaminate synthase-like 299 554 - -
Dere13g0972 964 FunFam Lysine-specific demethylase isoform A 216 565 - -
Dere13g0972 964 MobiDBLite consensus disorder prediction 924 938 - -
Dere13g0972 964 MobiDBLite consensus disorder prediction 804 870 - -
Dere13g0972 964 ProSiteProfiles JmjN domain profile. 221 262 IPR003349 -
Dere13g0972 964 MobiDBLite consensus disorder prediction 796 909 - -
Dere13g0972 964 SMART cupin_9 368 538 IPR003347 -
Dere13g0972 964 Pfam jmjN domain 222 254 IPR003349 -
Dere13g0972 964 Pfam JmjC domain, hydroxylase 398 521 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0972 Dere-ChrDere13 12499546 12506233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0972 218 677 JUMONJI Transcription Factor Family AT2G34880 32.282 5.21e-64 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dere13g0972 JmjC 7.1e-39 CL0029