Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0947 ATGTTAATGTACAAAACCCCCCCGTTTTCGTCTCTGGGACTCTCGGCACTGGTTCGTGCTGCTTTGCGAATTGCAGGAGTTGAGTGCGGTCCAGCTTCAACCATGGGTAAGAAACGAGATGATGCAGCCACAGTGGGCGAGCCAGTAGCCGAAGAAGTCCCCGACAACTCGGGAATCAAAGCAGAGAAGAGGAAAAAGAAGAAAAAAGATAAGCAAAACGAAGCTAGTCCCAAAAGAAAGCTCGAGGAAGTTGAGATGGGGGATAGCCCTGAACCGAAAAGGAAGAAGAATAAGAAAGATAAGAAGTGGAAAGAGAGCGCGGAGGAAACCGAAACCGTCAAAAGAAGTGACGCCGAGAACGGTGAAGATGAGGAGTCGGTGAGAGATGGGCACGTGGTCGTTACTGGGAAGAATATCAAAGACGAGAAATATGCGCCCACGACAACTTTTGCTGCATCAGGGCTTCCAGAGAAAGTCTTGGAGTGCTGCAAGAGTTTTGAGAGGCCATCCCCCATTCAGTCCCGAGCGTGGCCTTTTTTGTTAGATGGTCGTGATTTAATTGGCATTGCGGCAACTGGGTCAGGAAAGACATTAGCTTTTGGAATACCGGCTGTTATGCATGTTTTGAGGAAGCGCAAGAGTAAAGTGTCAAAGGGTCGGAATCCTCTCTGCCTTGTGCTCTCTCCCACGAGGGAACTGGCTCAACAAATTTCAGATGTTATGTGTGATGCTGGGAGCTCTTGTGGTGTGGAATCTATATGTTTGTATGGTGGAACTTCCAAAGGGCCACAAATATCTTCATTAAAATCTGGCATTGACATTGTCATTGGAACCCCTGGTCGTATAAAGGATCTGATTGAAATGGGTGTTTGTAGCCTGAAAGAAGCTTCATTTGTGGTCCTTGATGAAGCGGATCGAATGCTTGACATGGGATTTGAACAAGCAGTTCGCTCTATACTGGGTCAGACATGTTCTGTTCGGCAAATGGTTATGTTCAGTGCCACTTGGCCTCTACCAGTTCACCACTTAGCTCAAGAGTTTATGGATCCTAATCCTGTGAAAGTTGTTGTAGGATCAGAGGACTTAGCTGCCAATCATGATGTGATGCAGATAGTTGAGGTCTTGGATGATCGTTCACGAGATAAGCGCTTGATTGCTCTGCTAGAAAAGTACCACAAATCTCAGAGGAATCGGGTATTGGTTTTTGTCTTATATAAATTGGAAGCTACTCGAGTTGAAAAGATGCTTAATGAAGGGGGTTGGAAGGTTGTCTCGATACATGGGGACAAGGCACAATATGAACGTACAAAGTCACTATCATTATTCAAGAATGGGAGCTGTCCTTTGATGATTGCTACTGATGTGGCTGCTCGGGGATTGGATATTCCAGATGTTGAAGTAGTGATCAACTATAGCTTTCCTCTAACTACAGAAGATTATGTTCATAGAATTGGGAGGACAGGACGAGCTGGGAAGAAAGGTGTTTCCCATACATTCTTCACGCAGCAGAATAAGGGGCTTGCTGGGGAACTTGTGAATGTCTTAAGAGAAGCAAAGCAAATTGTGCCGGATGCTCTTTTGAAATTTGGCACGCACGTAAAGAAAAAGGAGTCCAAGCTTTATGGGGCTCACTTCAAGGAGATTTCTGCTGATGCTCCACAGTCACAAAAAATAACATTTGACAATTCTGACGAAGATTAA 1701 0.4521 MLMYKTPPFSSLGLSALVRAALRIAGVECGPASTMGKKRDDAATVGEPVAEEVPDNSGIKAEKRKKKKKDKQNEASPKRKLEEVEMGDSPEPKRKKNKKDKKWKESAEETETVKRSDAENGEDEESVRDGHVVVTGKNIKDEKYAPTTTFAASGLPEKVLECCKSFERPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAVMHVLRKRKSKVSKGRNPLCLVLSPTRELAQQISDVMCDAGSSCGVESICLYGGTSKGPQISSLKSGIDIVIGTPGRIKDLIEMGVCSLKEASFVVLDEADRMLDMGFEQAVRSILGQTCSVRQMVMFSATWPLPVHHLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDKRLIALLEKYHKSQRNRVLVFVLYKLEATRVEKMLNEGGWKVVSIHGDKAQYERTKSLSLFKNGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTQQNKGLAGELVNVLREAKQIVPDALLKFGTHVKKKESKLYGAHFKEISADAPQSQKITFDNSDED 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0947 566 Gene3D - 88 357 IPR027417 -
Dere13g0947 566 SMART ultradead3 165 371 IPR014001 -
Dere13g0947 566 SMART helicmild6 410 491 IPR001650 -
Dere13g0947 566 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 300 308 IPR000629 -
Dere13g0947 566 Gene3D - 358 533 IPR027417 -
Dere13g0947 566 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 96 526 - -
Dere13g0947 566 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 379 530 IPR001650 -
Dere13g0947 566 CDD SF2_C_DEAD 368 500 - -
Dere13g0947 566 MobiDBLite consensus disorder prediction 31 134 - -
Dere13g0947 566 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 177 354 IPR014001 -
Dere13g0947 566 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 504 IPR027417 -
Dere13g0947 566 Pfam Helicase conserved C-terminal domain 382 491 IPR001650 -
Dere13g0947 566 FunFam ATP-dependent RNA helicase RhlB 357 534 - -
Dere13g0947 566 CDD DEADc 166 355 - -
Dere13g0947 566 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 148 174 IPR014014 GO:0003724
Dere13g0947 566 MobiDBLite consensus disorder prediction 74 134 - -
Dere13g0947 566 Pfam DEAD/DEAH box helicase 171 338 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0947 Dere-ChrDere13 12210125 12228329 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0947 146 520 Eukaryotic Initiation Factors Gene Family AT3G19760 31.926 4.06e-54 187