Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0945 ATGAAGCATATTCTTTATGTACCTCGCCTCTCCACCCTTTTTGCTGATGTCAAGTTTCAACCTTTTGTCACTTTCTCTGAACTTCTCCCTGTGAAGAGAGACAGGAAAAGAAGAAGAAGAAGAGAAATGGCAGCTTGCACAGTGTACACAACAACACAATCTCTCAACACAAACTGCTCTATCTCATCAACATCAAAAGCACATTTGGGTTTTCATCAGAAACAGCTAGTTTTCTACAAGAGAAGCACCAAGAGAGGAGGAAGCAGCACCCCATGTGTGATAACATGTGGTACACCAGATCAGACAGTAGTGATTGGTCTAGCTGCTGATTCAGGGTGTGGGAAGAGCACCTTCATGAGAAGACTAACTAGTGTGTTTGGAGGAACAGCAGAACCACCCAAGGGTGGGAACCCAGACTCCAACACGCTCATAAGTGACACCACAACAGTTATATGCTTAGATGACTACCATTCATTGGACAGAACTGGAAGAAAAGAGAAGGGAGTCACTGCACTTGACCCAAGAGCCAACAATTTTGACCTCATGTATGAGCAAGTTAAGGCCATGAAGGAAGGAATTGCTGTGGAGAAACCCATTTACAATCATGTCACTGGTCTCTTGGACCCCCCAGAGCTCATCAAGCCTCCCAAAATCTTGGTCATTGAAGGCTTGCACCCAATGTTTGATCCTCGGGTCAGAGAACTCTTGGACTTCAGCATCTACTTAGACATCAGCAATGAAGTGAAATTCGCTTGGAAAATTCAGAGAGACATGGCAGAGCGTGGGCACAGCCTTGAAAGCATCAAAGCTAGCATTGAAGCTCGGAAGCCTGACTTTGATGCCTATATTGATCCTCAAAAGCAATATGCAGATGCAGTGATCGAAGTGTTGCCAACCCAACTCATTCCAGACGATAATGAGGGGAAGATTTTAAGAGTAAGGTTGATACAGAAAGAAGGGGTTAAGCATTTTAGCCCTGTTTACTTGTTTGATGAAGGCTCTACTATTTCCTGGATTCCATGTGGGAGGAAGCTAACCTGCTCTTATCCTGGCATTAAATTCTTCTATGGACCAGAGACCTACTATGGTCATGAGGTATCAGTTGTAGAGATGGATGGGCAATTTGACAGATTAGATGAACTGATATACGTTGAGAGCCATCTCAGCAACCTCTCTACAAAGTTCTATGGGGAGGTTACACAACAGATGTTGAAGCATGCTGACTTCCCAGGCAGCAACAATGGGACGGGTCTTTTCCAAACCATAATTGGTTTGAAGATAAGAGACTTATATGAGCAAATAATAGCCAGCAGGGCTGAGGCTCCAGTAGGAGCAGCAAAAGCCTAG 1347 0.4439 MKHILYVPRLSTLFADVKFQPFVTFSELLPVKRDRKRRRRREMAACTVYTTTQSLNTNCSISSTSKAHLGFHQKQLVFYKRSTKRGGSSTPCVITCGTPDQTVVIGLAADSGCGKSTFMRRLTSVFGGTAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKEGIAVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMFDPRVRELLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKILRVRLIQKEGVKHFSPVYLFDEGSTISWIPCGRKLTCSYPGIKFFYGPETYYGHEVSVVEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIIGLKIRDLYEQIIASRAEAPVGAAKA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0945 448 Pfam Phosphoribulokinase / Uridine kinase family 104 302 IPR006083 GO:0005524|GO:0016301
Dere13g0945 448 FunFam Phosphoribulokinase 99 329 - -
Dere13g0945 448 CDD PRK 104 393 - -
Dere13g0945 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 373 IPR027417 -
Dere13g0945 448 Gene3D - 99 332 IPR027417 -
Dere13g0945 448 ProSitePatterns Phosphoribulokinase signature. 253 266 IPR006082 GO:0005524|GO:0005975|GO:0008974
Dere13g0945 448 PRINTS Phosphoribulokinase family signature 218 236 IPR006082 GO:0005524|GO:0005975|GO:0008974
Dere13g0945 448 PRINTS Phosphoribulokinase family signature 109 126 IPR006082 GO:0005524|GO:0005975|GO:0008974
Dere13g0945 448 PRINTS Phosphoribulokinase family signature 271 294 IPR006082 GO:0005524|GO:0005975|GO:0008974
Dere13g0945 448 PRINTS Phosphoribulokinase family signature 253 270 IPR006082 GO:0005524|GO:0005975|GO:0008974
Dere13g0945 448 PANTHER URIDINE KINASE 100 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0945 Dere-ChrDere13 12166290 12169671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0945 156 330 PRT Gene Family AT3G27440 26.966 8.04e-17 80.5