Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0905 ATGCCTATCGTGTATCGTAGGTGCTATTGGAGCAATTGGGAGGTTCTAGAGGTTTCGTATTGCAACGATGAAGTATGGTCTCTACGCAACATGGGATATGATACGGATAGCCCCTCACAAGATGGGAGGGACGAAGACGATGATGAAGAATATGAGGGGGCTGGCAATGGCAATCGTTTGCTGGGGTTCATGTTCGGAAATGTTGATAATTCTGGTGATCTTGATGTTGATTACCTTGATGAGGATGCAAAGGAGCATCTTTCTGCACTTGCTGACAAGCTGGGTCCATCCCTGACGGATATAGATTTGTCAGGAAAATCACCACAAACACCAACTGACGTTGTTGAACAAGACTATGATGAGAAAGCTGAAGATGCAGTTGATTATGAAGATATTGATGAAGAGTATGATGGTCCAGAGACTGAAGCTGCAAATGAAGAGGATTATTTATTGCCAAAAAAAGAATTTTTATCCGTTGGAGCCTCTCTTGAAGTTTTGAAATCCAGATCTTCTGTCTTTGATGATGAAAATTATGACGAGGAATCTGAAAAGGAACAAGACTTGGTGAATAACATTTCTGAAGTTGATAACATCTCTTCAACCGGGGAGCAGGTAGAGAGTCTTGTTGATGCGTCTAAAGGAGAGAAATCTCAAGAACTTGATTCACTTGATGTCTCACAGCGGTCTGAAGAATTGGAAACTGATGTACAGAAACAACAGGAGGAAGGGCCTGAAGTTTTGAAAGGTTCTACTCCATTGCCCATTTTATGTGTGGAAGATGGGATGGTCATTTTGAGGTTCTCTGAAATTTTTGGTATTCATGAACCTTTGAGAAAGGGAGGGAGGAGAGATCATCGACCTTCCATTCCCCGAGATAGACACAAGTCTATAAATTTATCTGATATTGTAGAAGAGGATGAAGAGGCATTTTTAAGAGGCTTCTCTCATAGTCTCTTACTAAACAAAGAGGCTTGTGTGCACCAAAATGGTATATCAGAAAGCAATGATGCTGATGTGGATTTTTTGAAATTTGGATGTCTTCATGGGGCTTCCTCGACGAATTTAAAAGATGGTCGACAACCAAAGGACTCTTGTCTTAGTGCTGAGCCAATGAAAGAGGATTTTACAGATCTTTCCTGGGAAGAGCGTTCTCACTTGTGCACTGACTTTTATCCTCTTGATCAGCAAGACTGGGAAGACCAAATCATTTGGGGCAATTCCCCTGCTGCAAGTGACAATATTCTTGAGAGCTTTGAAATTTCTGGACCTGCTTCAGGACCTTTAGGGTGTGGTGAAGGAGAAATTGAAAGTGAAATGCAAAATATCCAGTGGGAGCCACAGAAAGAATTGGGGGAGAAAGATCATAATGTTTTCTTGTGCAGCTCTCCTGTCTCATTGGAGCCCTTTGGCTCATGGGATTCCTCAGTAGTTAAAACCAATTCATTGTCAAAGAATCTATTTCATCCCCAACTCTTGAGACTAGAAGCCAGACCTGAAGCTGATATCTCTAATTTCGCAGATGGTAGAAGGGAGAATATACCCGAGGAGCATAATCAAGGTAGTCTGTTAAAGCATTTTACCAAAGTTACACTAAAAAACCAAGACATGATGGAAGGGACTTGGATAGACAAGATTATATGGGAGGAGGTCAATAGACCTATTCTGAAACCAAAGCTAATCTTTGATCTTCAGGATGATCAAATGCACTTTGAAGTTTTGGATAATAAGGATGGTAGGCATCTTCGCCTACATGCAGGGGCTATGATTTTAACTCGTTCCTTAAATTCGAGCAGTGGAGATTCTTCTGAGCTCCCTGGACATGGAGCTCAATATGGATGGCGATCCATTGCTAATGATAAACATTATTCAAACAGGAAAACTTCCCAGCAGCTGAAATCTAATTCTAAAAAACGCTCAGCTCATGGTGTAAAAGTTTTTCACTCTCAACCTGCACTGAAACTTCAGACAACGAAATTGAAGTTGAGCAACAAAGATATTGCAAATTTTCACCGACCAAGAGGTTTATGGTATCCCCATGACAATGAGGTGGCTGTCAAAGAACAAGGGAAACTGCCAACACAAGGACCAATGAAAATTATTATGAAGAGCTTGGGTGGCAAGGGGAGTAAACTGCATGTTGATGCTGAAGAAACTCTCTCTTCTGTTAAAGCACAAGCTTCTAAAAAGCTAGATTTCAAACTATTGGAAACAGTGAAGATATTTTATCTAGGGAAGGAGCTTGAAGACCAGAAATCACTTGCTGCACAAAATGTTCGACCAAACTCCTTGTTACATCTTGTTCGTACGAAGATACATTTATGGCCAAGGGCACAAAGGGTTCCTGGTGAGAACAAGTCCTTGCGTCCTCCTGGGGCATTCAAGAAAAAGTCTGATCTATCTGTGAAAGATGGTCATGTTTTTTTAATGGAGTATTGTGAGGAAAGACCTTTACTTTTGAGCAATGCTGGAATGGGTGCCAGACTTTGTACATACTATCAAAAAAGTTCTCCAGATGATCAAGGTGGCTCCTTATTACGCAACACAAATAGTAGCTTGGGGCATGTTATTTCACTGGATCCTGCCGATAAGTCTCCATTTCTTGGAGATTTAAAACCTGGTTGCAGTCAATCTTCACTTGAGACAAACATGTACAGAGCACCCATATTTCCTCATAAAGTGCCATTAACCGACTACTTGCTAGTTCGTTCATCAAAGGGAAAGCTATCACTAAGACGCATTGATAAAATTAATGTGGTCGGACAGCAGGAGCCTCTTATGGAGGTATTGTCGCCTGGAAGTAAGAATCTTCAGACATATATGATGAACAGGCTGCTAGTACATATGTGCCGTGAATTTCAAGCTGCAGAGAAGCGACACTTGCCTCCATACATCCGCGTTGATGAGCTGCTTTCTCAGTTTCCTTACCAATCAGAAGCTTCATTTCGCAAGAAAATTAAGGAATATGCCCATTTACAGAAGGGAACAAATGGACAGTCAATTTTGGCTAAAAAGCGAAATTTTCGTATGTGGTCGGAGGACGAACTGAGAAAAATGGTGACACCAGAGCTTGTTTGTGCCTATGAAAGCATGCAAGCTGGTCTCTACCGACTTAAACATTTAGGAATAACTGAAACACATCCTACTAACATATCTTCTGCTATGAGTCGGCTTCCTGATGAAGCAATAGCACTGGCTGCGGCATCCCACATTGAGAGGGAGCTGCAAATTACTCCGTGGAACCTGAGTAGCAATTTTGTTGCCTGCACAAGCCAGGGGAAGGAAAATATTGAACGAATGGAAATTACTGGTGTTGGTGATCCATCTGGGCGTGGTTTGGGTTTTAGCTATGCTCGGGCTCCTCCAAAGGCACCAGTGTCAAGTGCAGTGGTGAAGAAGAAAACAGCCACTGCCCGGGGAGGTTCCACTGTTACTGGAACAGATGCCGATCTACGTAGATTAAGCATGGAGGCTGCACGAGAGGTTCTTCTCAAGTTTAATGTTCCTGAGGAAGTCATTGCTAAACAAACCAGGTGGCATCGCATTGCTATGATACGCAAACTTTCAAGTGAGCAAGCTGCATCTGGTGTAAAGGTGGACCCAACAACCATCAGCAAATATGCTCGTGGCCAGCGAATGTCCTTTCTTCAGCTACAGCAGCAGACCAGGGAGAAGTGCCAGGAGATTTGGGATCGACAAGTTCAGAGTCTTTCGGCTCTAAACGGTGATGAAAATGAGAGTGATTCAGAAGAAAATAGTGATCTAGATTCTTTTGCTGGTGATCTGGAAAATTTACTTGATGCTGAGGAGTGTGAAGAGGGAGAAGAGGGTACCAATGATTTCAAACGTGACAAGTCGGATGGTGTTAAGGGTCTCAAAATGAGAAGACGTCCAACCTTAGCCCAGGCAGAGGAGGAAATAGAAGACGAAGCAGCTGAGGCTGCTGAATTATTCAGGTTACTCATGGATGATGATGAAGATGACAGGAAGAAAAAGAAGAAGTCTAGATTTGTTGTGGAGGAAGCAGGATTGGTGCCAAAGCTACAATCAAGATTTGTCTTTGATAACACAGATCAAGTTAAGCAAATACCTAACACTGTACAACTAGATGGAACCAATTTTTTGAAAGAAAATACCATTACAAATCTCAGGGAGGAGGAAGGTATTTCTGCCAAAAAGAGCAAATCAGTGAAGGTCAATAAAGCTAAGAAGAGTGACCTTTCTCCTATTAGTCTACCAAATAAAAAAATAAAGTTAAATCTTGGGGAAGGACCCAAGGTATTCAAGGAAAAAAAACCATCGAGGGAAAGTTTTGTTTGTGGAGCATGTGGTCAGCTTGGGCACATGAGAACAAACAAGAACTGTCCAAAATATGGTGAAGATCTTGAAGCACAACTTGAATCAATAGACACGGAAAAAATGGGTGGAAAATCAAGCTTGTTGGATCCATCTGGTCAGTCCCAGCAGAAAGCCCTTTCCAAGAAGCTAATATCAAAAGGCTCGACAAAAATTGCCCCTGCTGAAGCTCCTGAGGGAGAAAAATCTAGTTTGAAGACAAAAGTTCTTCCAGTGAAATTCAAATGCAGCTCCACTGAAAAGCCTTCTGAAAAACCTGCAATTGAAGCTGCACAGAGTTCAGATAAGCCAGTCACTTCTGACTCAGAAACTGCCAAGTCTGCTAAGGTTAGTAGGATTTCAATTCCCAACAAAGTGAAGCCAGATGATATGCAGGCTGAATCTCGTAAGCATGCTATTGCTATACGGCCTCCCACTGATACAGGTAGAGGTCAAGTTGACTCTCAGAAGCGGTCAATTATAATACGACCTCCTACAGAAACAGATAGGGAGCAACCTCACAAGAAAATTATCATAAAACGCACAAAGGAGGTTATTGATATGGACCAGGTCAGTCCTAGTGAAAACACAGGATTTGAACACAGAAAAACTAAAAGAATTGTTGAATTGTCAAATTTTGAGAAGCACAGAAAACAGGAGACCATGTATTCAGTTGAAGCACTGGTTAAACGGAAAGCTAAGGAGGATAGAAGATGGTGGGATGAACAAGAGAAGAGGAGAAATGAAGAAAGACTCAGAGAAGACAGGGCAAGGAGGCTTCACGAGGAAGAAATGAGGATGCTCAAAGAACAAGAAAGGTTAGCGGAGTTAAAGAGATATGAAGAAGATATTAGGAGAGAGAGGGAAGAGGAAGAACGGCAGAAAGCAAAGAAGAAAAAGAAGAAGAAGGCCGAGTTCAGAGATGAGTATTTGGATGACCACAGGACAAGAAGATTTGATAACAGGGTGGTAGAAAGAGACCGGAGTGGAAAAAGGAGATCTGTTGTAGAGTTGGGAAGGTATGCAGCTGAATATACACCACCAACGAAACGGCGTAGAGGTGGCGGGGGAGAGGTTGGTTTGGCAAATATTTTGGAGCGCATTGTGGACGCCCTCAAAGATCGGTATGACCTGTCGTATCTTTTCTTGAAACCAGTGTCCAAGAAAGAGGCCCCTGATTACCTGGACATTATAGATAGGCCTATGGATCTTTCAAGAATAAGGGAGAAGGTGAGGAATATGGAGTACAAGAGCCGGGAAGATTTCAGACATGATGTATGGCAGATTACTTATAATGCCCATAAATATAACGACGGGCGAAACCCAGGAATTCCTCCCCTTGCTGATCAGCTGTTGGAGCTTTGTGACTATTTGTTGAATGAGAATGATGATAGCCTAACTGAAGCTGAAGCTGGTATTGAATCCAGGGACTTCTAG 5769 0.4226 MPIVYRRCYWSNWEVLEVSYCNDEVWSLRNMGYDTDSPSQDGRDEDDDEEYEGAGNGNRLLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGPSLTDIDLSGKSPQTPTDVVEQDYDEKAEDAVDYEDIDEEYDGPETEAANEEDYLLPKKEFLSVGASLEVLKSRSSVFDDENYDEESEKEQDLVNNISEVDNISSTGEQVESLVDASKGEKSQELDSLDVSQRSEELETDVQKQQEEGPEVLKGSTPLPILCVEDGMVILRFSEIFGIHEPLRKGGRRDHRPSIPRDRHKSINLSDIVEEDEEAFLRGFSHSLLLNKEACVHQNGISESNDADVDFLKFGCLHGASSTNLKDGRQPKDSCLSAEPMKEDFTDLSWEERSHLCTDFYPLDQQDWEDQIIWGNSPAASDNILESFEISGPASGPLGCGEGEIESEMQNIQWEPQKELGEKDHNVFLCSSPVSLEPFGSWDSSVVKTNSLSKNLFHPQLLRLEARPEADISNFADGRRENIPEEHNQGSLLKHFTKVTLKNQDMMEGTWIDKIIWEEVNRPILKPKLIFDLQDDQMHFEVLDNKDGRHLRLHAGAMILTRSLNSSSGDSSELPGHGAQYGWRSIANDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTTKLKLSNKDIANFHRPRGLWYPHDNEVAVKEQGKLPTQGPMKIIMKSLGGKGSKLHVDAEETLSSVKAQASKKLDFKLLETVKIFYLGKELEDQKSLAAQNVRPNSLLHLVRTKIHLWPRAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGARLCTYYQKSSPDDQGGSLLRNTNSSLGHVISLDPADKSPFLGDLKPGCSQSSLETNMYRAPIFPHKVPLTDYLLVRSSKGKLSLRRIDKINVVGQQEPLMEVLSPGSKNLQTYMMNRLLVHMCREFQAAEKRHLPPYIRVDELLSQFPYQSEASFRKKIKEYAHLQKGTNGQSILAKKRNFRMWSEDELRKMVTPELVCAYESMQAGLYRLKHLGITETHPTNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERMEITGVGDPSGRGLGFSYARAPPKAPVSSAVVKKKTATARGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSALNGDENESDSEENSDLDSFAGDLENLLDAEECEEGEEGTNDFKRDKSDGVKGLKMRRRPTLAQAEEEIEDEAAEAAELFRLLMDDDEDDRKKKKKSRFVVEEAGLVPKLQSRFVFDNTDQVKQIPNTVQLDGTNFLKENTITNLREEEGISAKKSKSVKVNKAKKSDLSPISLPNKKIKLNLGEGPKVFKEKKPSRESFVCGACGQLGHMRTNKNCPKYGEDLEAQLESIDTEKMGGKSSLLDPSGQSQQKALSKKLISKGSTKIAPAEAPEGEKSSLKTKVLPVKFKCSSTEKPSEKPAIEAAQSSDKPVTSDSETAKSAKVSRISIPNKVKPDDMQAESRKHAIAIRPPTDTGRGQVDSQKRSIIIRPPTETDREQPHKKIIIKRTKEVIDMDQVSPSENTGFEHRKTKRIVELSNFEKHRKQETMYSVEALVKRKAKEDRRWWDEQEKRRNEERLREDRARRLHEEEMRMLKEQERLAELKRYEEDIRREREEEERQKAKKKKKKKAEFRDEYLDDHRTRRFDNRVVERDRSGKRRSVVELGRYAAEYTPPTKRRRGGGGEVGLANILERIVDALKDRYDLSYLFLKPVSKKEAPDYLDIIDRPMDLSRIREKVRNMEYKSREDFRHDVWQITYNAHKYNDGRNPGIPPLADQLLELCDYLLNENDDSLTEAEAGIESRDF 1922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0905 1922 MobiDBLite consensus disorder prediction 1467 1620 - -
Dere13g0905 1922 PRINTS Bromodomain signature 1835 1851 IPR001487 GO:0005515
Dere13g0905 1922 PRINTS Bromodomain signature 1869 1888 IPR001487 GO:0005515
Dere13g0905 1922 PRINTS Bromodomain signature 1821 1834 IPR001487 GO:0005515
Dere13g0905 1922 PRINTS Bromodomain signature 1851 1869 IPR001487 GO:0005515
Dere13g0905 1922 ProSiteProfiles Bromodomain profile. 1818 1888 IPR001487 GO:0005515
Dere13g0905 1922 MobiDBLite consensus disorder prediction 209 242 - -
Dere13g0905 1922 Pfam Bromodomain 1809 1884 IPR001487 GO:0005515
Dere13g0905 1922 ProSiteProfiles Ubiquitin domain profile. 697 767 IPR000626 GO:0005515
Dere13g0905 1922 MobiDBLite consensus disorder prediction 33 56 - -
Dere13g0905 1922 Gene3D - 52 98 IPR036741 -
Dere13g0905 1922 SMART bromo_6 1798 1908 IPR001487 GO:0005515
Dere13g0905 1922 MobiDBLite consensus disorder prediction 1729 1748 - -
Dere13g0905 1922 MobiDBLite consensus disorder prediction 1676 1704 - -
Dere13g0905 1922 Pfam Ubiquitin family 701 769 IPR000626 GO:0005515
Dere13g0905 1922 MobiDBLite consensus disorder prediction 1479 1495 - -
Dere13g0905 1922 SUPERFAMILY Bromodomain 1789 1912 IPR036427 GO:0005515
Dere13g0905 1922 MobiDBLite consensus disorder prediction 622 636 - -
Dere13g0905 1922 Pfam TATA box-binding protein binding 48 91 IPR009067 -
Dere13g0905 1922 MobiDBLite consensus disorder prediction 100 121 - -
Dere13g0905 1922 SUPERFAMILY TAF(II)230 TBP-binding fragment 54 92 IPR036741 -
Dere13g0905 1922 Pfam Protein of unknown function (DUF3591) 616 1183 IPR022591 -
Dere13g0905 1922 MobiDBLite consensus disorder prediction 199 248 - -
Dere13g0905 1922 MobiDBLite consensus disorder prediction 1544 1562 - -
Dere13g0905 1922 Gene3D - 679 769 - -
Dere13g0905 1922 CDD Bromodomain 1808 1903 - -
Dere13g0905 1922 Coils Coil 222 242 - -
Dere13g0905 1922 MobiDBLite consensus disorder prediction 1573 1587 - -
Dere13g0905 1922 ProSitePatterns Bromodomain signature. 1823 1880 IPR018359 -
Dere13g0905 1922 CDD Ubl_TAFs_like 697 768 - -
Dere13g0905 1922 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 43 1921 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Dere13g0905 1922 FunFam Transcription initiation factor TFIID subunit 1 1762 1918 - -
Dere13g0905 1922 Gene3D - 1792 1921 IPR036427 GO:0005515
Dere13g0905 1922 Coils Coil 1702 1753 - -
Dere13g0905 1922 MobiDBLite consensus disorder prediction 617 643 - -
Dere13g0905 1922 SMART ubq_7 697 769 IPR000626 GO:0005515
Dere13g0905 1922 SUPERFAMILY Ubiquitin-like 667 767 IPR029071 -
Dere13g0905 1922 Coils Coil 1299 1319 - -
Dere13g0905 1922 FunFam Transcription initiation factor TFIID subunit 1 679 769 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0905 697 767 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 36.620 3.03e-06 47.4