Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0904 ATGTCCCTTCTCAGCAGATTTTTCTACAGGAGACCCCCAGATGGTTTGCTCGAATTTGTCGATAGAGTATACGTTTTCGATTCCTGCTTTTCCACCGAGGCATTGCCTGATGGAATGTACCAGATATATTTACACGAAATCATTACTGAGTTACATGAAGAATTCCCGGACTCTTCTTTTTTCGCCTTCAATTTTCGTGAAGGCGAGAAACGTAGTCAATTTGCTGAAATTCTTTGTGAATACGATGTTACTGTGATGGATTATCCACGACAATATGAGGGTTGCCCCATTCTTCCATTGTCATTGGTTCAACATTTTCTTCGTGTTTGTGAGAGCTGGCTTTCACTCGGGAATCAACAGAATGTTATTCTTCTCCACTGTGAGAGAGGAGGTTGGCCTCTCTTGGGGTTTCTTTTAGCTAGCTTTCTAATTTATAGAAGACTACACAGTGGTGAACGGAAAACACTTGAAATGGTGCATAGAGAGGCACCCAAAGGTTTCTTACAGCTATTGTCACCTTTAAACCCATTGCCCTCTCAGCTTCGTTATGTTCAGTATGTAGCAAGAAGGAACATAGCTCCTGAGTGGCCGCCTCCTGAGCGAGCTCTTTCTCTTGATTGTGTCATTCTCAGAGCCATTCCTAGTTTTGATTCCCAGAACGGATGCAGACCCATTATCCGCATTTTTGGTAGAAATCTTCTCAGCAAGGACGGCCTTTCTACTCAGATGCTCTACTCCATGCACAAGAAAAGGAAAACCTTAAGGCACTATCGCCAGGCAGACTGTGATGTGATCAAGATTGACATTCAATGTTTAGTACAAGGAGATGTGGTTTTAGAATGTGTCCATTTGGACTTAGATCCAGAAAGGGAAGTAATGATGTTTCGCATAATGTTCAACACGGCATTTATTCGATCCAACATCTTGATGCTGAACACTGAAAACCTGGACATTCTCTGGGATTCGAAGGAGCGGTATCCAAAAGGCTTCCGGGCAGAGGTTTTGTTTGGTGAGGTTGAGAGCATATCTCCTCCGAGAGCTCCAACAACTATGTTAAATGGTGAGGAGAAAGGTGGATTGCCCATTGAAGCTTTTTCAAGGGTTCAAGAACTTTTTAATGGTGTGGAGTGGCTTGACAATGGTGAAGATGCAGCTGTATGGTTGCTTAAACAACTTTCTGTGTTAAATGATGTCAAAGAGCTTTCAAGGTTGCAAGGTAAAGCAAGTTGGTACTCATCACCTGCTGACTCTGAAGATGAAAATAATGAATCAAGCACTGCTGATAGTTCAGATGAAGCCTTTGATGTAATTCCAAAATCTTCTACTGATATTTCCAAACTACTGGCACATGACACCCCTGATTCAGTCCCCTTGGCTTTTGAAAGTGATGGTGGAAATAATGTACATCTCACTTCAAGAACTTCTGATCTGTCATTGATTGAAAGTGTTTCACCATCTCATCATGCACTAAGTAAAGAATATCCTCCTTGTTCATCTCCACCATCACCACCACCTGTCCTTGTTACTCATTCTTCAACAACACTAGCACTGACACCTCTTCATCCACCTCCACCTCCACCTCCACCTCCACCTCCATCTATGTCTTACATAGGGCCTTCTCCACCTGCACCACCTTGTCCACCTCCAACTCCCATGATAGCCAAAAATGGGCCTCCTCCACCTCCACCTCATTCGCATCTTTCTAATATTAATGAAGACCCTTGCACAACTTCGGCAACATCTTCTGCAAATTGCAAGAGTCCTATAGCACCCTCACCACCGCCGCCACCACCACCACCTCCTCCACCCCCATTTGTCTCTTGCAAAGCTCCACCATCGTTGTCACCGCTGCCGCCACCACCACCACCACCACCACCACCACCTCCCCCTCATCCATCCACTTCTAATCAACAAACCTTGCCACCACCACCCCCTCCCCGACCACCACCACTACCACCCACTATGGGAAGTACAATTAACAAGGTGCAACAACTAGGACCGCCACCACCACCACCACCACCTCCACCACCACCTTTACTATCAAACTTTTCAAATTCATCTAATATGACATCTATCCAAGAGGCAAGACTTCCACCTCCACCACCTCCACCACCTCCAGCTCCTGTAGGCCAGAATACTAGCAATGCTTCTAAATTACCTCCACCTCCACCACCTCCTCCAAGACCTACACTACCAGGTTTAGTTCCCTTGCCTCCCCAATCGGTGCCAAAGCCACCAAATGCGCCTCCTCCACCTCCACCTCCACCTCCACCACCTAGTCGAGGTGTACCACCACCTCCGCCTCTACCACCTAGTCGTAGTGCAGCACCACCACCTCCGCCTCCACCACCTGGTCTCGGTGCAACACCACCTCCGCCTCCACCACCAAGTCAGGGTGCAGCACCACCTCCGCCTCCGCCACCTGGTCGGGGTGCAATACCTCCCCCACCCCTACCTCTTGCAGCCAGGGGATCTGGTGTGCCACCACCACCGCCCCCATCTAATGCGAAAGGTAAAGCTTCATCGACATCAACAAATGTTGGAAGAGGTCGAGGATCTGGCAGTACTGCTAATGCCCCTAAGAAAGCTTCATTAAAGCCCTTACATTGGGTTAAAGTTACACGAGCAATGCAAGGGAGTCTATGGGCTGATTCACCGAAACAAGATAATCAATCAAGGCCCCCTGAAATAGACATATCAGAACTTGAGAGTCTGTTTTCAGCAGCATCTGCTTCTGATGGGAGCAATACTAAAGGTGTAGGTCGCCGTGGTTCTAATATCAACAAACCTGAGAAAGTTCAATTGATTGACTTGCGAAGAGCATATAATTGTGAAATAATGCTCTCAAAAATCAAAATTCCATTGCCAGACATGCTTAAAGCAGTGCTGGCATTGGATTCTTCTGCTTTAGACATTGATCAGGTTGAGAATCTCATTAAGTTCTGTCCCACAAAAGAAGAAATGGAGATGTTGAAGAATTACACTGGGAACAAGGAAATGCTTGGAAAGTGTGAGCAGTTTTTCATGGAGTTGATGAAGGTTCCACGAGTAGAAGCTAAATTGCGAGTATTTGCTTTTAAAATCACCTTTTCTAGTCAGGTGAATGATTTGAGATTAAATTTGAATACAATCAATGATGCTGCTAGGGAGGTGAAAGAATCTATGAAGTTGCGTCAAATTATGCAGACTATTCTTACTTTGGGCAATGCCTTAAATCAGGGAACAGCACGAGGATCTGCAGTGGGATTCAAATTGGATAGCCTTCTAAAATTATCTGATACTCGTGCAAGAAATAACAAAATGACTCTGATGCATTATTTGTGTAAGCTTCTTTCTGAGAAAATGCCAGAATTGCTAGATTTTGGCAAGGATCTCATTCATTTAGAAGCAGCTTCAAAGATCCAACTAAAAGCATTGGCTGAAGAAATGCAAGCTGTGAGTAAAGGTCTGGAGAAAGTTGAACAGGAACTTACTGCTTCAGAAAATGATGGTGTTATATCTGCAGGGTTCCGTAAGGTGTTGAAGAATTTTCTTGATATTGCTGAAGCTGAAGTGAGGTCACTTATATCATTGTATTCTGAAGTGGGAAGAAATGCAGATTCTTTGTCCCAGTATTTTGGTGAGGATCCTGCTCGGTGCCCCTTTGAGCAAGGAGGAAGGCTTGATGACAGAAATGACATCCTAATTGGTGCAATCCATCTTGACAGTGAGATGAATGGACCTATGCCGAGCACCAGTGGTGGATGCACTTTGAATAGTCTTCAGTTGGCATGTAAATTGGGTACCAACTTGGAGCTTACACCTTCCCAGGGAAATTTTTTTTTTTCAAGCATCAAGTTCCCGAGATGTGAAGTTATGCATAACTCTGTATCGGATGCCATGTTTGACGATTCCATGGAATTTATGTGGTTATCTGTTATAGTTTGTTATGTGACACAAATCCTTGTTGTCTTCGTGAAGATGTTCAACAAATCAAGGGAGGAGAATGAAAGACAGGCAGACGCTGAGAAAAAGAAATTAGAGAAGGAAGCCCTGAAGGAACAACGGATACCTGTTAATTCACATTCAAAAAAAGATGGTGTTCAGTAG 4089 0.4468 MSLLSRFFYRRPPDGLLEFVDRVYVFDSCFSTEALPDGMYQIYLHEIITELHEEFPDSSFFAFNFREGEKRSQFAEILCEYDVTVMDYPRQYEGCPILPLSLVQHFLRVCESWLSLGNQQNVILLHCERGGWPLLGFLLASFLIYRRLHSGERKTLEMVHREAPKGFLQLLSPLNPLPSQLRYVQYVARRNIAPEWPPPERALSLDCVILRAIPSFDSQNGCRPIIRIFGRNLLSKDGLSTQMLYSMHKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRIMFNTAFIRSNILMLNTENLDILWDSKERYPKGFRAEVLFGEVESISPPRAPTTMLNGEEKGGLPIEAFSRVQELFNGVEWLDNGEDAAVWLLKQLSVLNDVKELSRLQGKASWYSSPADSEDENNESSTADSSDEAFDVIPKSSTDISKLLAHDTPDSVPLAFESDGGNNVHLTSRTSDLSLIESVSPSHHALSKEYPPCSSPPSPPPVLVTHSSTTLALTPLHPPPPPPPPPPPSMSYIGPSPPAPPCPPPTPMIAKNGPPPPPPHSHLSNINEDPCTTSATSSANCKSPIAPSPPPPPPPPPPPPFVSCKAPPSLSPLPPPPPPPPPPPPPHPSTSNQQTLPPPPPPRPPPLPPTMGSTINKVQQLGPPPPPPPPPPPPLLSNFSNSSNMTSIQEARLPPPPPPPPPAPVGQNTSNASKLPPPPPPPPRPTLPGLVPLPPQSVPKPPNAPPPPPPPPPPPSRGVPPPPPLPPSRSAAPPPPPPPPGLGATPPPPPPPSQGAAPPPPPPPGRGAIPPPPLPLAARGSGVPPPPPPSNAKGKASSTSTNVGRGRGSGSTANAPKKASLKPLHWVKVTRAMQGSLWADSPKQDNQSRPPEIDISELESLFSAASASDGSNTKGVGRRGSNINKPEKVQLIDLRRAYNCEIMLSKIKIPLPDMLKAVLALDSSALDIDQVENLIKFCPTKEEMEMLKNYTGNKEMLGKCEQFFMELMKVPRVEAKLRVFAFKITFSSQVNDLRLNLNTINDAAREVKESMKLRQIMQTILTLGNALNQGTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLLSEKMPELLDFGKDLIHLEAASKIQLKALAEEMQAVSKGLEKVEQELTASENDGVISAGFRKVLKNFLDIAEAEVRSLISLYSEVGRNADSLSQYFGEDPARCPFEQGGRLDDRNDILIGAIHLDSEMNGPMPSTSGGCTLNSLQLACKLGTNLELTPSQGNFFFSSIKFPRCEVMHNSVSDAMFDDSMEFMWLSVIVCYVTQILVVFVKMFNKSREENERQADAEKKKLEKEALKEQRIPVNSHSKKDGVQ 1362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0904 1362 PANTHER FORMIN-J 777 1358 - -
Dere13g0904 1362 MobiDBLite consensus disorder prediction 695 710 - -
Dere13g0904 1362 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Dere13g0904 1362 ProSiteProfiles Formin homology-2 (FH2) domain profile. 855 1257 IPR015425 -
Dere13g0904 1362 MobiDBLite consensus disorder prediction 837 860 - -
Dere13g0904 1362 MobiDBLite consensus disorder prediction 664 681 - -
Dere13g0904 1362 Coils Coil 1136 1163 - -
Dere13g0904 1362 SMART PTEN_C2_2 198 338 IPR014020 -
Dere13g0904 1362 MobiDBLite consensus disorder prediction 588 655 - -
Dere13g0904 1362 MobiDBLite consensus disorder prediction 569 587 - -
Dere13g0904 1362 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 339 IPR035892 -
Dere13g0904 1362 MobiDBLite consensus disorder prediction 1326 1362 - -
Dere13g0904 1362 MobiDBLite consensus disorder prediction 518 567 - -
Dere13g0904 1362 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
Dere13g0904 1362 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 18 187 IPR029021 -
Dere13g0904 1362 Coils Coil 1034 1054 - -
Dere13g0904 1362 Coils Coil 1323 1350 - -
Dere13g0904 1362 Coils Coil 1361 1362 - -
Dere13g0904 1362 MobiDBLite consensus disorder prediction 409 433 - -
Dere13g0904 1362 Gene3D Formin, FH2 domain 874 1359 IPR042201 -
Dere13g0904 1362 MobiDBLite consensus disorder prediction 717 836 - -
Dere13g0904 1362 Gene3D - 197 342 - -
Dere13g0904 1362 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Dere13g0904 1362 MobiDBLite consensus disorder prediction 488 870 - -
Dere13g0904 1362 PRINTS Proline rich extensin signature 523 544 - -
Dere13g0904 1362 PRINTS Proline rich extensin signature 579 604 - -
Dere13g0904 1362 PRINTS Proline rich extensin signature 493 505 - -
Dere13g0904 1362 PRINTS Proline rich extensin signature 545 561 - -
Dere13g0904 1362 SMART it6_source 524 1294 IPR015425 -
Dere13g0904 1362 SUPERFAMILY Formin homology 2 domain (FH2 domain) 930 1216 - -
Dere13g0904 1362 FunFam Formin-like protein 854 1222 - -
Dere13g0904 1362 Pfam Formin Homology 2 Domain 859 1217 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0904 Dere-ChrDere13 11522068 11535144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0904 809 1217 FH2 protein (formin) Gene Family AT1G31810 78.240 0.0 628