Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0902 ATGGAGCTCGGCGACTTATTGCAGGAGCTTGTGAACGTAGAGGTTGAGATTCAAGATGTTGAAGATCAAATAAGGGCATTGATTGAAAGACAAGAGAAGTTATATGAGAGAAAATCAGAGCTGAAGGCTATACTAGAAGCATGTGAAGAATCTGGAAACCAGGTCAATGATGGTGCTCCAAGTGCTGTGGAAAATTGGTCTGGGCCATTTGAATGGGATTCTAAAGCAGATGATGTCAGACTGAATATTTTTGGCCTTTCTACCTATCGTGCAAATCAAAGAGAGATAGTTAATGCCATCATGAGCGGAAGGGATGTTCTGGTGATTATGGCTGCGGGTGGTGGCAAGAGCCTCTGCTACCAGCTTCCAGCTGTTCTCCGTGATGGAATTGCTCTTGTTGTTAGTCCTTTGCTTTCTTTAATTCAGGATCAGGTGATGGGTTTGACTGCTTTAGGCATCCCAGCATATATGTTGACATCAACAACAAGTAAGGAAGATGAGAAGTTCATATACAAGGCTCTGGATAAGGGTGAGGGGGATCTCAAAGTATTGTACGTCACACCTGAAAAGATATCAAAGAGCAAGAGATTTATGTCAAAACTTGAAAAATGCCATCGTGCTGGTCGTCTCTCTCTAATTTCAATAGATGAGGCACATTGCTGCAGTCAGTGGGGTCATGACTTTAGACCTGACTACAAGAACCTCGGTATTCTTAAGACTCAATTTCCTAATGTTCCATTAGTTGCTTTGACCGCAACTGCTACTCAAAGGGTGCAAATTGATCTGATGGAGATGTTGCACATTCCAAGATGTGTCAAATTTGTCAGCACAGTCAACAGACCAAACCTATTTTATATGGTAAAGGAAAAGTCCTCGGTTGGTAAGGTGGTTATTGATGAAATTGCTGAATTCATTCAAGAATCTTATCCAAATAAGGAATCTGGGATAGTTTATTGCTTCTCTAGGAAAGAATGTGAACAGGTTGCAAAGGAGTTACGGGAGAGGGGAATTTCTGCAGATCATTACCATGCAGATATGGATGTACATGCTCGGGAAAAAGTACATATGCGGTGGAGCAATAGCAAGTTGCAGGTCATAGTTGGTACGGTAGCATTTGGTATGGGAATCAACAAACCAGATGTCAGATTTGTCATCCATCACAGCTTGAGCAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCTGGCCGAGATGGACTTCCATCTGAATGTGTACTCTACTTTAGACCTGGTGATGTCCCCCGACAGAGTTCAATGGTCTTCTACGAAAATTCAGGACTGCTGAATTTGTATGACATAGTCCGGTATTGTCAGTCCAAAAAAAAATGTCGCCGCAGTGCCATTTTCCAGCACTTCGCTGAGCCACTGCAAGACTGCAATGGGATGTGTGACAACTGTGCATTCTCAAATGAGGTGAAAGAACTGGATGTCTCTTGTCATGCAAAGCTGATTGTTTCTTTGTTGCAAGATATGCAAGAAAATGATCAGAGGTTAACAATGTTGCAGTTAGTTGACAAAATGAAAATAAAGCAGAAGAGGGAACTAGGTTCTGAATTGAACAGAGAGGAAATAGAGCAGCTCATCTTACAGCTTTTACTAGAACGGGTTTTGAAAGAAGAATTTCAGCATACTGCTTATGCCACAAATGCTTATGTTGCTGTGGGGCCATTAGCCAAGCAAATATTGCAAGGAAAGAAGACTGTCAAGATTGAGATTTCTAGTGAACAGAGAACAAAGGCTGGTGTAAGATTAGCTAAACGCAGGATTGGTTCCTCTGGTCTGGAGCTAAAGCTTGATGAGTTGAGAAAAGAATTGTCTTCCGCTCATGGAGGAATACTCCCACACTCTGTCTTGTCCACTCAACAAATCAGCCTAATAAGTTCTCAAAAACCTAACTCATTGAAACAGTTGGAGAAGATAATAGGAAAACTGAAGACAGAAAAGTATGGAGATAGAATACTCATGCAAATTGAAAAGTATTCTGATTTCAAGCCGCCTGATGAGACAAATGAACAAGGCCCTGATGGTAGAGCTGCAAAGAGGTCCAGGACCAAGAAACCTGTTGTGCTTATTGAGAGTAGTGAGGAAGATGAAACATGA 2124 0.4171 MELGDLLQELVNVEVEIQDVEDQIRALIERQEKLYERKSELKAILEACEESGNQVNDGAPSAVENWSGPFEWDSKADDVRLNIFGLSTYRANQREIVNAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTTSKEDEKFIYKALDKGEGDLKVLYVTPEKISKSKRFMSKLEKCHRAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPLVALTATATQRVQIDLMEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKVVIDEIAEFIQESYPNKESGIVYCFSRKECEQVAKELRERGISADHYHADMDVHAREKVHMRWSNSKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECVLYFRPGDVPRQSSMVFYENSGLLNLYDIVRYCQSKKKCRRSAIFQHFAEPLQDCNGMCDNCAFSNEVKELDVSCHAKLIVSLLQDMQENDQRLTMLQLVDKMKIKQKRELGSELNREEIEQLILQLLLERVLKEEFQHTAYATNAYVAVGPLAKQILQGKKTVKIEISSEQRTKAGVRLAKRRIGSSGLELKLDELRKELSSAHGGILPHSVLSTQQISLISSQKPNSLKQLEKIIGKLKTEKYGDRILMQIEKYSDFKPPDETNEQGPDGRAAKRSRTKKPVVLIESSEEDET 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0902 707 SMART RQC_2 484 582 IPR018982 GO:0006260|GO:0006281|GO:0043138
Dere13g0902 707 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Dere13g0902 707 Pfam RQC domain 481 586 IPR018982 GO:0006260|GO:0006281|GO:0043138
Dere13g0902 707 FunFam ATP-dependent DNA helicase 600 670 - -
Dere13g0902 707 NCBIfam RecQ family ATP-dependent DNA helicase 82 513 IPR004589 GO:0004386|GO:0006310
Dere13g0902 707 Gene3D HRDC domain 600 669 IPR044876 -
Dere13g0902 707 CDD SF2_C_RecQ 280 416 - -
Dere13g0902 707 Coils Coil 3 37 - -
Dere13g0902 707 Gene3D - 480 582 IPR036388 -
Dere13g0902 707 FunFam ATP-dependent DNA helicase 480 581 - -
Dere13g0902 707 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 297 449 IPR001650 -
Dere13g0902 707 MobiDBLite consensus disorder prediction 668 707 - -
Dere13g0902 707 Gene3D - 46 279 IPR027417 -
Dere13g0902 707 ProSiteProfiles HRDC domain profile. 596 675 IPR002121 GO:0003676
Dere13g0902 707 SMART ultradead3 85 288 IPR014001 -
Dere13g0902 707 CDD DEXHc_RecQ1 71 279 - -
Dere13g0902 707 Pfam Helicase conserved C-terminal domain 302 406 IPR001650 -
Dere13g0902 707 Gene3D - 280 476 IPR027417 -
Dere13g0902 707 MobiDBLite consensus disorder prediction 668 701 - -
Dere13g0902 707 SMART helicmild6 326 407 IPR001650 -
Dere13g0902 707 FunFam ATP-dependent DNA helicase 46 279 - -
Dere13g0902 707 FunFam ATP-dependent DNA helicase 280 476 - -
Dere13g0902 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 423 IPR027417 -
Dere13g0902 707 Pfam HRDC domain 605 662 IPR002121 GO:0003676
Dere13g0902 707 Pfam RecQ zinc-binding 419 475 IPR032284 -
Dere13g0902 707 Pfam DEAD/DEAH box helicase 91 258 IPR011545 GO:0003676|GO:0005524
Dere13g0902 707 PANTHER DNA HELICASE RECQ FAMILY MEMBER 67 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0902 Dere-ChrDere13 11452983 11476368 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0902 84 421 Eukaryotic Initiation Factors Gene Family AT3G19760 19.547 5.55e-08 53.9