LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere13g0894	ATGAATAGCATCAACGATGATAATTCCAGACAAGATCTGGACCCTCAAAGTGACCACAGTTCCGACTATTTGGCTCACTCCCATCCCCACTCTCTTCCTCTCCAGCCTCAGCCTCAGCCCCAGCCTCGCCGCCCTCGTGGGTTTGCGGCCACGGCTGCCGGAACGGCCCCCAATTCGGCCGGAAAGGGGAAGAAAGAGAGAGAAAAGGAGAAGGAGCGCACCAAGCTCCGAGAGCGTCACCGTCGAGCAATCACCAGCCGGATGCTCGCGGGGCTCCGTCAGTATGGAAATTTTCCTCTCCCGGCGCGTGCGGACATGAATGATGTGCTCGCCGCACTCGCACGCGAGGCTGGTTGGGTTGTGGAGGCAGATGGCACCACCCACCGGCAGTGCCCACCTCCTTCCCAAATGGCATCATTTGCTGCAAGGTCAGTCGAAAGCCCTCTTTCTGCAGGTTCTTTAAGAGCTTGCTCTGTTAAAGAAACACTGGAGAATCAGCCACCAGTACTTAGAATCGATGAAAGCTTGTCACCTGCTTCCATTGATTCTGTTGTAATTGCAGAAAGGGACTCAAGGAATGAGAAATATCCAAGTGCAAGCCCCATGAATCCAGTAGATTGCTTGGAAGCTGATCAGCTTATGCAGGACATTCATTCTGGGGTGCATGAGAATGATTTTACTGGCACACCTTATGTTCCTGTTTATGTAAAACTACCAGCTGGTATTATTAACAAATTTTGCCAGTTGATTGATCCTGAAGGAGTTAGACAGGAGCTAATTCATATTAAGTCTTTAAATATTGATGGTGTCATTGTGGATTGTTGGTGGGGCATTGTTGAAGGGTGGAGCCAACAGAAATATGTGTGGTCTGGCTATAAGGAACTTTTGAACATTATTAGAGAAATCAAGTTGAAGTTGCAGGTTGTCATGGCTTTTCATGAATGTGGAGGGAATGGTTCTAGTGATCCATTGATTGCCCTCCCACAATGGGTTTTGGAGATTGGAAAAGACAACCAGGACATATTTTTCACAGATCGCGAAGGACGGAGGAACACTGAATGTCTATCTTGGGGCATTGACAAAGAGAGAGTTTTAAAAGGAAGAACTGGAATTGAGGTCTATTTTGATTTCATGAGAAGCTTTCGGACAGAGTTTGATGACTTTTTTGCAGAAGGCCTCATTTCTGCTGTAGAAATCGGACTTGGGGCATCTGGGGAGCTGAAATATCCTTCATTTTCAGAAAGGATGGGATGGAGGTATCCTGGTATCGGTGAGTTTCAGTGCTATGATAAATATCTGCTACAAAGTCTACGCAGAGCAGCTAAATTACGTGGTCACTCTTTCTGGGCCAGAGGACCTGATAATTCAGGGCATTACAATTCTATGCCACATGAAACTGGATTCTTTTGTGAGCGGGGGGATTATGACAACTATTATGGGCGCTTCTTCTTGCATTGGTATGCCCAGTCATTGATTGACCATGCTGATAATGTTTTGTCTCTTGCAAGCCTGGCTTTTGAGGAAACAAAAATAATTATCAAGGTTCCTGCTATATACTGGTGGTACAAGACTACTAGTCATGCAGCAGAGTTGACAGCAGGATATCACAATCCTACAAACCAGGATGGATACTCTCCTCTTTTTGAGGTTCTGAGAAAACACGGTGTGACTATGAAGTTTGTCTGCTTAGGATTTCAGCTTTCTAGTGCAGAAGCAGATGAATCATTGGCTGACCCAGAGAGCTTGACTTGGCAGGTTTTAAACTCATCCTGGGATCGAGGGTTGACAGTTGCTGGAGAGAATGCACTACCATGTTATGATAGAGAAGGGTTCAAGAGACTAGTTGATATAGCGAAACCAAGAAATGATCCTGATCGCCGCCACTTTTCATTCTTCACATATCAACAACCATCTCTGTTTCAGGGGAATTTAAGCTTGCCAGAGTTGGATTACTTCATCAAATGCATGCATGGTGACATGGCGGGAGATCTGTAA	1995	0.4591	MNSINDDNSRQDLDPQSDHSSDYLAHSHPHSLPLQPQPQPQPRRPRGFAATAAGTAPNSAGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVEADGTTHRQCPPPSQMASFAARSVESPLSAGSLRACSVKETLENQPPVLRIDESLSPASIDSVVIAERDSRNEKYPSASPMNPVDCLEADQLMQDIHSGVHENDFTGTPYVPVYVKLPAGIINKFCQLIDPEGVRQELIHIKSLNIDGVIVDCWWGIVEGWSQQKYVWSGYKELLNIIREIKLKLQVVMAFHECGGNGSSDPLIALPQWVLEIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDFMRSFRTEFDDFFAEGLISAVEIGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLLQSLRRAAKLRGHSFWARGPDNSGHYNSMPHETGFFCERGDYDNYYGRFFLHWYAQSLIDHADNVLSLASLAFEETKIIIKVPAIYWWYKTTSHAAELTAGYHNPTNQDGYSPLFEVLRKHGVTMKFVCLGFQLSSAEADESLADPESLTWQVLNSSWDRGLTVAGENALPCYDREGFKRLVDIAKPRNDPDRRHFSFFTYQQPSLFQGNLSLPELDYFIKCMHGDMAGDL	664

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere13g0894	664	MobiDBLite	consensus disorder prediction	11	25	-	-
	Dere13g0894	664	PANTHER	BETA-AMYLASE 1, CHLOROPLASTIC	168	658	IPR001554	GO:0000272\|GO:0016161
	Dere13g0894	664	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	475	494	IPR001554	GO:0000272\|GO:0016161
	Dere13g0894	664	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	526	537	IPR001554	GO:0000272\|GO:0016161
	Dere13g0894	664	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	402	424	IPR001554	GO:0000272\|GO:0016161
	Dere13g0894	664	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	266	280	IPR001554	GO:0000272\|GO:0016161
	Dere13g0894	664	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	509	525	IPR001554	GO:0000272\|GO:0016161
	Dere13g0894	664	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	287	305	IPR001554	GO:0000272\|GO:0016161
	Dere13g0894	664	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	309	330	IPR001554	GO:0000272\|GO:0016161
	Dere13g0894	664	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	582	604	IPR001554	GO:0000272\|GO:0016161
	Dere13g0894	664	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	544	567	IPR001554	GO:0000272\|GO:0016161
	Dere13g0894	664	SUPERFAMILY	(Trans)glycosidases	226	660	IPR017853	-
	Dere13g0894	664	Pfam	Glycosyl hydrolase family 14	251	635	IPR001554	GO:0000272\|GO:0016161
	Dere13g0894	664	Gene3D	Glycosidases	222	663	-	-
	Dere13g0894	664	MobiDBLite	consensus disorder prediction	1	78	-	-
	Dere13g0894	664	Pfam	BES1/BZR1 plant transcription factor, N-terminal	61	204	IPR008540	-
	Dere13g0894	664	MobiDBLite	consensus disorder prediction	61	78	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere13g0894	Dere-ChrDere13	11348779	11357900	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere13g0894	29	660	Glycoside Hydrolase	AT5G45300	66.667	0.0	879

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	BES1	Dere13g0894		Glyco_hydro_14	6e-88	CL0058