Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0863 ATGTTTGAATTAAGGGGTTTATCTGATTCAATTCACCGGGCTCTGCGGTTTTGGTGTTCTGTTCTGCTCACGGTAAAGGCTGTGTTTTCTCATGTGCGCTTAAACTTGGAGATGAGTGATACCAAAGAAAACGAGGAAGCAAGCCGGGACGTCCCGTTGGCTGCGGATGAATGCCAGCAGTCTGTTGACGAACAGGTTCAACCGCAAGCTTCCTCTGTTGCCGTTCCGGTAGAGGATACTGTAAATCATGTTGAAAATGGTGAGTTAGTGGCAGATGTTATAAATGACAAACCGGAGGCAATTGCAGAGAGCGCTCCTCAACAAGAAGTTCAAAATACTCTACACTCTGTCCCAGTAGAAGTTAATGCTCAAGTTTTGGTCAAAACTGAGCCTGAACAAACTTCAAATGTGAAGACTGAAGTCCAAGAGTGTCAGAGAGAGACAAGCATTGAGAATGATGCCAATACATACGAAAATCTTAATACCGCTCAAATAGTTGTGGAGGTCAAGCGAGAAGCTTGCGATGTGCTTGACAGTAAAAGTAAAGCTGACTGCATGCTCGCAAGTCATATAGAACCCACTACACCTCAACCTGTTCTTGCAAATAATGAAGCTATGATCAAGATCGGAGTAGAAGTTGAGAATAAGGCTAGTGAAAAACAAGCTACTGCACCTGCGGATAATGGGAATTCAAGCTCGAAGCACTTGTTCTTTTTGGATGCTGACCATTCATATAATGGTAATGAATCAGGAACAGAAGAGGAGCAATCAGCTTTTATGAAGGAGCTTGAAAATTTCTTCAGGGAAAGGAGCATGGAATTTAAACCTCCTAAATTTTATGGAGAGGGGCTAAATTGCCTTAAGTTGTGGAGAGCTGTGACCAGATTGGGTGGCTATGATAAGGTAACCTCATGTAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAAGACATGCACCACAGTTTCATGGACATTTCGAGGTTTTTATGAGAAGGCACTTCTTGATTATGAAAGGCATAAAACAAAAGGTGGTGAGCTTACTATACCTGTTGTGTCTCATACAGAGCCTGTGAATATTGAAAATCAGGCTACAGCATCAGGTAGAGCACGGAGAGATGCTGCAGCACGGGCTATGCAAGGTTGGCACTCGCAACGTCTTCTTGCTAATGGTGAAGTTAGTGACCCTATTATTAAGGATAGGAATTCTATGTCCATGCAAAAGCGTGAAAAGCAGCTTAAAAGTATCAATTTACTTAAACGTAAGAAACCATCTTACATGGATAATCCAGTCAAAGCGGCACGTAGTAAACCATCTAAGCCACAATTGGATACATCAGTGATTGATATTGGACCTCCTGCTGATTGGGTAAAAATCAATGTGCAAAAAACTAAGGATTGTTTTGAGGTTTATGCTTTAGTTCCTGGGCTTCTTCGGGAGGAGGTGCGTGTTCAATCGGACCCAGCAGGACGCTTGGTCATAAGTGGTGAACCTGAGCATCCTGATAATCCTTGGGGTGTGACACCTTTCAAAAAGGTTGTGAGTTTGCCTTCAAGAATTGACCCTCATCACACATCAGCTGTGGTGACCCTACATGGACAGTTGTTCGTTCGTGTCCCGTTTGAGCAATCAGAATAG 1644 0.4337 MFELRGLSDSIHRALRFWCSVLLTVKAVFSHVRLNLEMSDTKENEEASRDVPLAADECQQSVDEQVQPQASSVAVPVEDTVNHVENGELVADVINDKPEAIAESAPQQEVQNTLHSVPVEVNAQVLVKTEPEQTSNVKTEVQECQRETSIENDANTYENLNTAQIVVEVKREACDVLDSKSKADCMLASHIEPTTPQPVLANNEAMIKIGVEVENKASEKQATAPADNGNSSSKHLFFLDADHSYNGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTKGGELTIPVVSHTEPVNIENQATASGRARRDAAARAMQGWHSQRLLANGEVSDPIIKDRNSMSMQKREKQLKSINLLKRKKPSYMDNPVKAARSKPSKPQLDTSVIDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHHTSAVVTLHGQLFVRVPFEQSE 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0863 547 Pfam Hsp20/alpha crystallin family 464 546 IPR002068 -
Dere13g0863 547 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 447 547 IPR002068 -
Dere13g0863 547 ProSiteProfiles ARID domain profile. 253 344 IPR001606 GO:0003677
Dere13g0863 547 FunFam AT-rich interactive domain-containing protein 3 253 352 - -
Dere13g0863 547 CDD ACD_sHsps-like 462 542 - -
Dere13g0863 547 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 71 546 IPR045147 GO:0006357
Dere13g0863 547 SMART ARID_2 250 340 - -
Dere13g0863 547 Pfam ARID/BRIGHT DNA binding domain 256 340 IPR001606 GO:0003677
Dere13g0863 547 Gene3D - 448 547 IPR008978 -
Dere13g0863 547 SUPERFAMILY HSP20-like chaperones 456 543 IPR008978 -
Dere13g0863 547 CDD ARID 255 340 - -
Dere13g0863 547 Gene3D - 253 350 IPR036431 GO:0003677
Dere13g0863 547 SUPERFAMILY ARID-like 248 354 IPR036431 GO:0003677
Dere13g0863 547 SMART bright_3 254 345 IPR001606 GO:0003677
Dere13g0863 547 FunFam AT-rich interactive domain-containing protein 3 439 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0863 Dere-ChrDere13 10858464 10866817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0863 248 545 ARID Transcription Factor Family AT1G76510 64.356 6.28e-132 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Dere13g0863 HSP20 1.3e-05 CL0190