Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0854 ATGACTCGTACTCTCAGAATTCTCAAATCCACAGACAACGCCACCGCCGTCGCCGCTGCCCCGCCGCCTGAGGCCGTGGCTTTGGAATCGGACTTCGTGGTGATCCTTGCGGCTCTGCTCTGCGCTCTCATATGCATGGTGGGCCTCATCGCCGTCGCTCGTTGCGCCTGGTTCCGGCGCGGCGGCGGCGGCGGCGGATCTCCGAGGCAGGCTTTGGCGAACAAAGGCCTCAAGAAGAAGGTGCTCCAGTCCATACCTAAATTCACTTACATTAACAGCAATCCGGAGAAGTGGGTGGCCACGTCGGAGTGCGCGATTTGCTTGGCCGAGTTCACCGATCTTGACGAGATCCGAGTTCTGCCGCAGTGCGGCCACGGATTCCACGTGGCGTGCATCGACACGTGGCTCGGGTCCCACTCTTCATGCCCTTCCTGCCGGCAGATTCTCGCGGTGGCTGCTAGGTGCCGGAAGTGCGGCCTCTACCCGGCGTCCGCCGCCGGAATCAGTGTCAGAGAACAGGAGGTCAAGTCCGGAGAAGACGACAATGGCAGTACTGCTTCGAATGTTAATAACTCTGTTAGCGATCATCACAGGCACATGAACAATGAATTCCTGCCTTGA 621 0.5926 MTRTLRILKSTDNATAVAAAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWFRRGGGGGGSPRQALANKGLKKKVLQSIPKFTYINSNPEKWVATSECAICLAEFTDLDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILAVAARCRKCGLYPASAAGISVREQEVKSGEDDNGSTASNVNNSVSDHHRHMNNEFLP 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0854 206 FunFam E3 ubiquitin-protein ligase ATL6 67 152 - -
Dere13g0854 206 Pfam Ring finger domain 103 146 IPR001841 -
Dere13g0854 206 MobiDBLite consensus disorder prediction 180 195 - -
Dere13g0854 206 CDD RING-H2_EL5-like 103 146 - -
Dere13g0854 206 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 20 159 - -
Dere13g0854 206 SMART ring_2 104 145 IPR001841 -
Dere13g0854 206 SUPERFAMILY RING/U-box 87 155 - -
Dere13g0854 206 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Dere13g0854 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 151 IPR013083 -
Dere13g0854 206 MobiDBLite consensus disorder prediction 172 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0854 Dere-ChrDere13 10776687 10777307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0854 10 184 C3H Transcription Factor Family AT1G20823 58.201 2.89e-61 188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1201 09 15784820 15785458 Dere13g0854 13 10776687 10777307 CCT