Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dere13g0834 | ATGAAGCGCGATTTCTACGAAATCTCCGACGACGAATGGGAGAACCATTCCTTTAAGCCCTCTCGAGTTCTCAAAAAAACGCAGACTTCTGCTCCCCCGCCTATAGAGTCCTTTGCTTTTGGGTCGGGTAAGCCCGAGAATTCTGACCAAAGTAGTGATGAATGCGTACAGGTGACGGAAACTTTGGAGGAGCAAGGTTTGGAGGATGAGGATGTGGAGCTGGAGGGAGGCAGTTCTGGGGCAGTGGCAAATCGTGGCCGTCGGTTCGTTGTCGATGATGAGGAGAGCGATAGGGATGTTGCGGAAGTGTATGAAATAAGGTCAACTGATGAGGACGAAGGAGAAGAGGAAGAGCGGGATGATAATGACGTGGTGGGTAGGGCTTTGCACAAGTGTGCAAAAATATCTGCTGAATTGAAAAGAGAGCTATATGGGTCCTCGGGAACTGCCTGCGATCGGTATTCTGAGGCGGAATCTTCTTCAGTGAGAATTGTGAATCAGGATGATGTTGATGTGGCATGTGGGTCTGAGGATTCTGATTTTCAGCCTGTCCTTAAGCGATATCAGCTGGTTGGTGTCAACTTTCTGCTTCTGTTATATCGGAAGGGTATTGGAGGAGCCATATTGGCAGATGAAATGGGTCTTGGGAAAACAGTTCAGGCCATCACATATTTAACCTTGTTGAAGCACTTGCATAATGATCCTGGTCCACATCTTATAGTATGTCCTGCTTCTGTTTTGGAAAATTGGGAAAGGGAGCTAAAAAGGTGGTGCCCATCCTTTTCTGTTCTGCAATATCATGGCTCTGGACGAGCAATGTACTGCAAGGAGTTGAGCTCTCTGTCCAAGGCGGGATTGCCTCCTCCGTTCAATGTTATTCTTGTCTGTTATTCACTTTTTGAACGACACAGTGCACAGCAGAAAGATGATCGTAAAATTCTGAAGCGTTGGAGGTGGAGCTGTGTTTTGATGGATGAGGCACATGCCTTGAAGGACAAGAATAGCTATAGGTGGAAAAATCTGATGTCTGTTGCACGAAACGCAAACCAGCGTTTGATGCTGACAGGGACTCCACTTCAAAATGATCTACACGAATTATGGTCATTGTTGGAGTTTATGATGCCTGATATTTTTGCTACTGAAGATGTTGACTTGAAAAAGTTACTGAATGCAGAAGATGGAGATTTAGTTGGTCGCATGAAGTCCATCCTGGGGCCATTTATTTTACGGCGGTTAAAATCTGACGTGATGAAGCAACTTGTTCCTAAAATACAACGGGTTGAATATGTTGAAATGGAAATGCAACAACAAAATGCATATCGGGAAGCCATTGAGGAGTATCGTGCTATTTCACGAGCTCGAATGGCAAAATGTTCTAGGCCTAACTCAAATGATGTTCTTGAAGTTCTTCCTCGTCGACAAATTAACAACTATTTTGTTCAGTTCCGCAAGATTGCAAACCATCCTCTGTTAGTTAGGCGAATCTATAGTGATGAGGATGTCATTCGCTTTGCTAAGAAATTACATCCAATGGGTGCCTTTGGCTTTGAATGTACCTTGGACAGAGTTATTGATGAACTTAAAGGTTACAATGACTTCTCTATCCACCAGCTTTTACGTCATTATGGTGTCACTGATAGAAAGGGTATCCTACCAGATAAAAATGTTATGCTTTCTGCAAAATGTCGGGCCTTAGCTGAACTTCTTCCTTCACTTCATAAGGGTGGTCATCGAGTTTTAATATTTAGTCAATGGACATCGATGCTTGACATATTGGAGTGGACACTGGATGTCATTGGATTGACCTACAGACGTCTTGATGGAAGTACGCAGGTGATAGAGAGGCAAACAATAGTTGATACATTCAATAATGATACTTCAATATTTGCATGCTTGCTTTCCACAAGGGCTGGAGGACAAGGCTTGAACTTGATAGGAGCTGATACTGTTGTAATTCATGACATGGATTTCAATCCTCAGATTGATAGACAGGCAGAAGATCGTTGTCATCGGATAGGTCAAATGAAGCCTGTAACTGTATATCGGCTGGTGACCAAGGGTACAGTCGATGAAAATGTGTATGAGATTGCAAAAAGAAAGCTTGTATTGGATGCTGCTGTCCTTGAGTCCGGCATGGAGATGGATGATAAAGGTGACATGCCTGAGAAGACCATGGGAGAAATATTATCTGCAATTTTGTTGGGTTAA | 2208 | 0.4348 | MKRDFYEISDDEWENHSFKPSRVLKKTQTSAPPPIESFAFGSGKPENSDQSSDECVQVTETLEEQGLEDEDVELEGGSSGAVANRGRRFVVDDEESDRDVAEVYEIRSTDEDEGEEEERDDNDVVGRALHKCAKISAELKRELYGSSGTACDRYSEAESSSVRIVNQDDVDVACGSEDSDFQPVLKRYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKHLHNDPGPHLIVCPASVLENWERELKRWCPSFSVLQYHGSGRAMYCKELSSLSKAGLPPPFNVILVCYSLFERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFATEDVDLKKLLNAEDGDLVGRMKSILGPFILRRLKSDVMKQLVPKIQRVEYVEMEMQQQNAYREAIEEYRAISRARMAKCSRPNSNDVLEVLPRRQINNYFVQFRKIANHPLLVRRIYSDEDVIRFAKKLHPMGAFGFECTLDRVIDELKGYNDFSIHQLLRHYGVTDRKGILPDKNVMLSAKCRALAELLPSLHKGGHRVLIFSQWTSMLDILEWTLDVIGLTYRRLDGSTQVIERQTIVDTFNNDTSIFACLLSTRAGGQGLNLIGADTVVIHDMDFNPQIDRQAEDRCHRIGQMKPVTVYRLVTKGTVDENVYEIAKRKLVLDAAVLESGMEMDDKGDMPEKTMGEILSAILLG | 735 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dere13g0834 | 735 | Pfam | SNF2-related domain | 205 | 491 | IPR000330 | GO:0005524|GO:0140658 | |
Dere13g0834 | 735 | CDD | SF2_C_SNF | 551 | 684 | - | - | |
Dere13g0834 | 735 | SMART | ultradead3 | 181 | 386 | IPR014001 | - | |
Dere13g0834 | 735 | Gene3D | - | 421 | 496 | IPR027417 | - | |
Dere13g0834 | 735 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 198 | 376 | IPR014001 | - | |
Dere13g0834 | 735 | Pfam | Helicase conserved C-terminal domain | 561 | 673 | IPR001650 | - | |
Dere13g0834 | 735 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 317 | 714 | IPR027417 | - | |
Dere13g0834 | 735 | Gene3D | - | 533 | 732 | IPR027417 | - | |
Dere13g0834 | 735 | MobiDBLite | consensus disorder prediction | 43 | 59 | - | - | |
Dere13g0834 | 735 | MobiDBLite | consensus disorder prediction | 23 | 96 | - | - | |
Dere13g0834 | 735 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 564 | 726 | IPR001650 | - | |
Dere13g0834 | 735 | PANTHER | SNF2/RAD54 HELICASE FAMILY | 70 | 713 | - | - | |
Dere13g0834 | 735 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 178 | 411 | IPR027417 | - | |
Dere13g0834 | 735 | Gene3D | - | 184 | 420 | IPR038718 | - | |
Dere13g0834 | 735 | SMART | helicmild6 | 590 | 673 | IPR001650 | - | |
Dere13g0834 | 735 | FunFam | Protein CHROMATIN REMODELING 19 isoform A | 156 | 434 | - | - | |
Dere13g0834 | 735 | CDD | DEXHc_Snf | 185 | 378 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dere13g0834 | Dere-ChrDere13 | 10393098 | 10401452 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dere13g0834 | 206 | 700 | RAD5 or RAD16-like Gene Family | AT5G22750 | 27.480 | 1.92e-46 | 176 |