Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0834 ATGAAGCGCGATTTCTACGAAATCTCCGACGACGAATGGGAGAACCATTCCTTTAAGCCCTCTCGAGTTCTCAAAAAAACGCAGACTTCTGCTCCCCCGCCTATAGAGTCCTTTGCTTTTGGGTCGGGTAAGCCCGAGAATTCTGACCAAAGTAGTGATGAATGCGTACAGGTGACGGAAACTTTGGAGGAGCAAGGTTTGGAGGATGAGGATGTGGAGCTGGAGGGAGGCAGTTCTGGGGCAGTGGCAAATCGTGGCCGTCGGTTCGTTGTCGATGATGAGGAGAGCGATAGGGATGTTGCGGAAGTGTATGAAATAAGGTCAACTGATGAGGACGAAGGAGAAGAGGAAGAGCGGGATGATAATGACGTGGTGGGTAGGGCTTTGCACAAGTGTGCAAAAATATCTGCTGAATTGAAAAGAGAGCTATATGGGTCCTCGGGAACTGCCTGCGATCGGTATTCTGAGGCGGAATCTTCTTCAGTGAGAATTGTGAATCAGGATGATGTTGATGTGGCATGTGGGTCTGAGGATTCTGATTTTCAGCCTGTCCTTAAGCGATATCAGCTGGTTGGTGTCAACTTTCTGCTTCTGTTATATCGGAAGGGTATTGGAGGAGCCATATTGGCAGATGAAATGGGTCTTGGGAAAACAGTTCAGGCCATCACATATTTAACCTTGTTGAAGCACTTGCATAATGATCCTGGTCCACATCTTATAGTATGTCCTGCTTCTGTTTTGGAAAATTGGGAAAGGGAGCTAAAAAGGTGGTGCCCATCCTTTTCTGTTCTGCAATATCATGGCTCTGGACGAGCAATGTACTGCAAGGAGTTGAGCTCTCTGTCCAAGGCGGGATTGCCTCCTCCGTTCAATGTTATTCTTGTCTGTTATTCACTTTTTGAACGACACAGTGCACAGCAGAAAGATGATCGTAAAATTCTGAAGCGTTGGAGGTGGAGCTGTGTTTTGATGGATGAGGCACATGCCTTGAAGGACAAGAATAGCTATAGGTGGAAAAATCTGATGTCTGTTGCACGAAACGCAAACCAGCGTTTGATGCTGACAGGGACTCCACTTCAAAATGATCTACACGAATTATGGTCATTGTTGGAGTTTATGATGCCTGATATTTTTGCTACTGAAGATGTTGACTTGAAAAAGTTACTGAATGCAGAAGATGGAGATTTAGTTGGTCGCATGAAGTCCATCCTGGGGCCATTTATTTTACGGCGGTTAAAATCTGACGTGATGAAGCAACTTGTTCCTAAAATACAACGGGTTGAATATGTTGAAATGGAAATGCAACAACAAAATGCATATCGGGAAGCCATTGAGGAGTATCGTGCTATTTCACGAGCTCGAATGGCAAAATGTTCTAGGCCTAACTCAAATGATGTTCTTGAAGTTCTTCCTCGTCGACAAATTAACAACTATTTTGTTCAGTTCCGCAAGATTGCAAACCATCCTCTGTTAGTTAGGCGAATCTATAGTGATGAGGATGTCATTCGCTTTGCTAAGAAATTACATCCAATGGGTGCCTTTGGCTTTGAATGTACCTTGGACAGAGTTATTGATGAACTTAAAGGTTACAATGACTTCTCTATCCACCAGCTTTTACGTCATTATGGTGTCACTGATAGAAAGGGTATCCTACCAGATAAAAATGTTATGCTTTCTGCAAAATGTCGGGCCTTAGCTGAACTTCTTCCTTCACTTCATAAGGGTGGTCATCGAGTTTTAATATTTAGTCAATGGACATCGATGCTTGACATATTGGAGTGGACACTGGATGTCATTGGATTGACCTACAGACGTCTTGATGGAAGTACGCAGGTGATAGAGAGGCAAACAATAGTTGATACATTCAATAATGATACTTCAATATTTGCATGCTTGCTTTCCACAAGGGCTGGAGGACAAGGCTTGAACTTGATAGGAGCTGATACTGTTGTAATTCATGACATGGATTTCAATCCTCAGATTGATAGACAGGCAGAAGATCGTTGTCATCGGATAGGTCAAATGAAGCCTGTAACTGTATATCGGCTGGTGACCAAGGGTACAGTCGATGAAAATGTGTATGAGATTGCAAAAAGAAAGCTTGTATTGGATGCTGCTGTCCTTGAGTCCGGCATGGAGATGGATGATAAAGGTGACATGCCTGAGAAGACCATGGGAGAAATATTATCTGCAATTTTGTTGGGTTAA 2208 0.4348 MKRDFYEISDDEWENHSFKPSRVLKKTQTSAPPPIESFAFGSGKPENSDQSSDECVQVTETLEEQGLEDEDVELEGGSSGAVANRGRRFVVDDEESDRDVAEVYEIRSTDEDEGEEEERDDNDVVGRALHKCAKISAELKRELYGSSGTACDRYSEAESSSVRIVNQDDVDVACGSEDSDFQPVLKRYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKHLHNDPGPHLIVCPASVLENWERELKRWCPSFSVLQYHGSGRAMYCKELSSLSKAGLPPPFNVILVCYSLFERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFATEDVDLKKLLNAEDGDLVGRMKSILGPFILRRLKSDVMKQLVPKIQRVEYVEMEMQQQNAYREAIEEYRAISRARMAKCSRPNSNDVLEVLPRRQINNYFVQFRKIANHPLLVRRIYSDEDVIRFAKKLHPMGAFGFECTLDRVIDELKGYNDFSIHQLLRHYGVTDRKGILPDKNVMLSAKCRALAELLPSLHKGGHRVLIFSQWTSMLDILEWTLDVIGLTYRRLDGSTQVIERQTIVDTFNNDTSIFACLLSTRAGGQGLNLIGADTVVIHDMDFNPQIDRQAEDRCHRIGQMKPVTVYRLVTKGTVDENVYEIAKRKLVLDAAVLESGMEMDDKGDMPEKTMGEILSAILLG 735
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0834 735 Pfam SNF2-related domain 205 491 IPR000330 GO:0005524|GO:0140658
Dere13g0834 735 CDD SF2_C_SNF 551 684 - -
Dere13g0834 735 SMART ultradead3 181 386 IPR014001 -
Dere13g0834 735 Gene3D - 421 496 IPR027417 -
Dere13g0834 735 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 198 376 IPR014001 -
Dere13g0834 735 Pfam Helicase conserved C-terminal domain 561 673 IPR001650 -
Dere13g0834 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 714 IPR027417 -
Dere13g0834 735 Gene3D - 533 732 IPR027417 -
Dere13g0834 735 MobiDBLite consensus disorder prediction 43 59 - -
Dere13g0834 735 MobiDBLite consensus disorder prediction 23 96 - -
Dere13g0834 735 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 564 726 IPR001650 -
Dere13g0834 735 PANTHER SNF2/RAD54 HELICASE FAMILY 70 713 - -
Dere13g0834 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 411 IPR027417 -
Dere13g0834 735 Gene3D - 184 420 IPR038718 -
Dere13g0834 735 SMART helicmild6 590 673 IPR001650 -
Dere13g0834 735 FunFam Protein CHROMATIN REMODELING 19 isoform A 156 434 - -
Dere13g0834 735 CDD DEXHc_Snf 185 378 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere13g0834 Dere-ChrDere13 10393098 10401452 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0834 206 700 RAD5 or RAD16-like Gene Family AT5G22750 27.480 1.92e-46 176
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere13g0834 SNF2_N 2e-55 CL0023