Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0825 ATGGTAGCTGGCGCGCAGCAACAAAACCAGCCACAACCTCAATCGCATCAGCAAACTCAGCAGACTACACCCACTGCGCAAGATGAGGCCTTAAAGAGGAACACGGATTGCGTTTACTTTCTTGCCTCTCCCCTGACATGCAAAAAGGGAAGCGAATGCGAGTACCGCCATAGTGAGTATGCTCGGGTTAATCCCCGAGATTGTTGGTATTGGTTGAATGGTAATTGCTTGAATCCAAAATGTTCCTTTCGTCATCCGCCTCTTGATGGCTTCTTATCACCACAGGCAGCCACTGCTGGTGGATCATCTTTACCCCCATCACAGGTTGCACCAACTTCTGCAGCACATGCACCTTATAATTCTACCAAACAACCTGTCCCTTGCATTTTCTTCCAGAAAGGGCTTTGCTTAAAAGGTGACCGATGTGCTTTCTTGCATGGACCGAGTCCTAACACCAGTAATAAAGTTCCTCAGGTCCAGGTGACTAACCAGGGTACTGAGCCTCCAAGTTTTAAGAAGGTTTTTGGTGGCACAGAAAAGTCTACACAGGAAAGAAAAGTTTCCCAAGCAAACATAGCAAAGTCAGTTGCAGGCTCTGAAGCTAAACCTGTCCAAAATGTTGAAACTGCTTCACAGAGAAATGTAGTTGCCATAGAGAGGCATGCACCCCCACCTATGGGATCTGATAATGGGGCTTCTAGATTCAATGTAACAAATACTCCACCTTTCACCAATGGAACCGCTGTTGTCAGGCCTAACCGTCTGCATCAATCTCATGTGCCTGATGATCATAGCTTCCACAATGGTAAGGAAAGTGACGAATTTTTGAGAGAATCCTCTCCTGGGTTTGATGTTCTTGTAGCTGATGAACTGAGGAATTCAGATTACTATGATAGAGAGGATCAATATGGAAAAGCAAGAGGTCAAGATGGAATGAACTTGGACTCTGTGAATGAATATGATTTGGGACATTCTGTGGATTATAAATCTGTAGCTGATATGGACCGGGAAAGATATTGTGGGCCACAAGGTTATGACTCATATGATCGCATGCAAGAGACATATGTTTGGGATCAGCACAGGAATTCATCTGAAAGAATATTAAGGGCACCAGCCCAGTTAGAAAGGATGACTAACTGCAGATCTGGCAGTCCTGAAAATGTTCGGGTCTCAGATCTGCGACATCATTTATCCAAGCGCAGGCGGGTCAATGGTTTGAAATCTGTTGTCAGTCATGACTATGCCCTTCAGGGCCATGATGATGAGCAAAGTCACCAGTTCTCTTCTCGAATGGATTCACTTAATGAAAGCTCACTCAGTAATCGCCTCCGAGGCAGGATAAAGCTTCCAGCAAATGGTGATGATGATCACCAGGAGAGGGATTCAGACAGGGGAAGAAATAGGAGCACGTTGTCACCTGGAACTAAGCCAACCCCTCACCAAGGGAGGTTCCGAGACAGATTAAGAGGGAGAGTGCAAGAAGATTATGAGAGGAAAAACTATAGGGATAGACCAATCAGGAGAGAAATAATTGGGGACCAGATCACTGATTTTGATGGACCAAAAAGTCTTGCTGAATTGCGAAGTGTAAAGAGTACTGATAAGGAGCAGCAATCTCTCGGGAAGAGAAAAAGTTTAAAGGAACAACAGAAATCTGAAGATGATTTTTTGTTTGAAGGTCCAAAACCTCTTAGTGAGATTTTGAAGGAGAAGAGAGCAGCTGGAGCTGAAGTTTCCAAGGGTGGCAAATCATCTGAGAATAAAGGAGACAATAAGGATAGAGAAATTCCAAATGGCTCGGATTATACCTCTTTCACAGACGCACAAAATGGCAATTTGCCTGAAACTAAGGAAGATGTTAAGAACCAAAAATCCGAGTTTCAGGTGACTGATGAGGCGGTTGGAAGAGAAGTATATAAGGCTGATGTAACTCATGGTCAATCATCTGAAGATGGAATGGTCTACGATGAAGCCACAGAAGACCAGGAGTTTGAAGGTGATAATCCGAAGGATGGTGATTATTATTACGAGCAAGTTGATGAGGGAGACTATAATTATGAGGAAGGTGAAAATGCAGAGCAGGAAGAATACATGGATGATGAAGATGGGGATGACTTTGCTAAGAAGATTGGTGTCATGCTTACGTGA 2148 0.4404 MVAGAQQQNQPQPQSHQQTQQTTPTAQDEALKRNTDCVYFLASPLTCKKGSECEYRHSEYARVNPRDCWYWLNGNCLNPKCSFRHPPLDGFLSPQAATAGGSSLPPSQVAPTSAAHAPYNSTKQPVPCIFFQKGLCLKGDRCAFLHGPSPNTSNKVPQVQVTNQGTEPPSFKKVFGGTEKSTQERKVSQANIAKSVAGSEAKPVQNVETASQRNVVAIERHAPPPMGSDNGASRFNVTNTPPFTNGTAVVRPNRLHQSHVPDDHSFHNGKESDEFLRESSPGFDVLVADELRNSDYYDREDQYGKARGQDGMNLDSVNEYDLGHSVDYKSVADMDRERYCGPQGYDSYDRMQETYVWDQHRNSSERILRAPAQLERMTNCRSGSPENVRVSDLRHHLSKRRRVNGLKSVVSHDYALQGHDDEQSHQFSSRMDSLNESSLSNRLRGRIKLPANGDDDHQERDSDRGRNRSTLSPGTKPTPHQGRFRDRLRGRVQEDYERKNYRDRPIRREIIGDQITDFDGPKSLAELRSVKSTDKEQQSLGKRKSLKEQQKSEDDFLFEGPKPLSEILKEKRAAGAEVSKGGKSSENKGDNKDREIPNGSDYTSFTDAQNGNLPETKEDVKNQKSEFQVTDEAVGREVYKADVTHGQSSEDGMVYDEATEDQEFEGDNPKDGDYYYEQVDEGDYNYEEGENAEQEEYMDDEDGDDFAKKIGVMLT 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0825 715 MobiDBLite consensus disorder prediction 415 500 - -
Dere13g0825 715 FunFam Zinc finger CCCH domain-containing protein 17 25 88 - -
Dere13g0825 715 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 28 713 - -
Dere13g0825 715 MobiDBLite consensus disorder prediction 1 27 - -
Dere13g0825 715 ProSiteProfiles Zinc finger C3H1-type profile. 31 60 IPR000571 GO:0046872
Dere13g0825 715 MobiDBLite consensus disorder prediction 97 116 - -
Dere13g0825 715 Pfam Zinc-finger containing family 32 87 IPR041686 -
Dere13g0825 715 Gene3D - 113 173 - -
Dere13g0825 715 Gene3D - 18 88 - -
Dere13g0825 715 MobiDBLite consensus disorder prediction 598 616 - -
Dere13g0825 715 MobiDBLite consensus disorder prediction 428 442 - -
Dere13g0825 715 MobiDBLite consensus disorder prediction 448 467 - -
Dere13g0825 715 MobiDBLite consensus disorder prediction 480 500 - -
Dere13g0825 715 ProSiteProfiles Zinc finger C3H1-type profile. 62 88 IPR000571 GO:0046872
Dere13g0825 715 MobiDBLite consensus disorder prediction 528 597 - -
Dere13g0825 715 SUPERFAMILY CCCH zinc finger 124 147 IPR036855 GO:0046872
Dere13g0825 715 ProSiteProfiles Zinc finger C3H1-type profile. 122 149 IPR000571 GO:0046872
Dere13g0825 715 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 125 148 IPR000571 GO:0046872
Dere13g0825 715 MobiDBLite consensus disorder prediction 617 633 - -
Dere13g0825 715 SMART c3hfinal6 32 59 IPR000571 GO:0046872
Dere13g0825 715 SMART c3hfinal6 122 148 IPR000571 GO:0046872
Dere13g0825 715 SMART c3hfinal6 64 87 IPR000571 GO:0046872
Dere13g0825 715 MobiDBLite consensus disorder prediction 162 185 - -
Dere13g0825 715 MobiDBLite consensus disorder prediction 373 396 - -
Dere13g0825 715 MobiDBLite consensus disorder prediction 527 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0825 Dere-ChrDere13 10249274 10252856 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere13g0825 zf-CCCH_3 2.5e-11 CL0537