Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0822 ATGATTGGAGTTTGGCTTGTTGTGTTAATGATCCTCTCCAATGGGCTTTGTTCATCTGGGGTTGGCATGAATAATTCAGCAATACCTGAGTTTGTAAATATTGGGGCTCTTTTCTCTTTCAATACCTCTGTTGGTAGAACTGCAAAATTAGCTATTAAAGCAGCAGTTGAAGATATAAATTCTGATCCTTCCATTCTTGGTAAAACTAAGCTGAGGGTCTCAATGCAAGAGGATTCCAAATACAGAGGTTTTTTGAGCATTGCTGAGGTCTTGCAGCTCATGTCAAGACACACTGTGGCTATTATTGGCCCCCAGGCCTCTACAACAGCTCATGTCATATCTCATGTTGCAAACGAGCTCCAAGTTCCACTGCTATCATTTTCAGCCACAGACCCCACCCTTTCTTCGCTTCAATTTCCATTCTTTGTTAGAACTGCTCCTAGTGATATTTATCAGATGACTGCAATTGCTGAGCTTGTTGACTACTATGGATGGAAAGAGGTTATTGCAATCTATGTTGATGATGACCATGGGAGGAATGGAATTGGTGCACTAGGGGATCAGCTTGCAGAGAGACGTTGTAAAATCTCCTATAAAGCACCTATGACCCCTGAAGCAACTAGAGAGGAGATTACTGATGTGCTCGTTCAGGTGGCTCTTGCTGAATCTCGGATTATAGTTCTTCACACTAATGTTGCCTGGGGCCCCAAGGTGTTCAATGTGGCAAAATATCTTGGGATGATGGGAACTGGGTATGTCTGGATAGCCACTAACTTTCTCACTACTGTGCTAGATTCAGACAGTCCCCTCCTTTCAGATGAAAAGGAAGAAATTCAAGGAGTTCTTACACTGCGTGTGCACACAGCAGATTCAGAGTTCAAGAGAAGGTTCATTTCTAGGTGGAAAAACCTGACTAGTGGAATGACTGCTAGTGGCCCCCTTGGATTGAGCACTGTTGGTCTCTATGCTTATGATACTGTTTATGTGCTTGCTTGTGCCCTTGATACATTTTTCAAACAAGGGAACCGAATCACATTCTCATATGATTCGAAGTTATCTCAACTACGAGGAGACAGCTTGCATCTTGATGCAGTGAAGATCTTTGATCAAGGAACTCTGTTGCGTAAAATTATTTATGGGGTTAACATGACTGGTATAACAGGTCAAATTAAGTATACATCTGATGGCAACCTTGTTAATCCATCGTATGAAATTGTCAATGTAATAGGAACAGGTGCTCGGAGGATTGGTTATTGGTCCAATTACTCTGGATTGTCAGTTGTCCCTCCTGAAGCACTTTATTCAAGACCTGCCAATCATTCCAGTGCAAATCAAAAGGTACTCCCTGTGATTTGGCCTGGAGAAACAACCCAGAAGCCCCGTGGTTGGGTTTTTCCAAACAATGGAAGGCACTTAAGAATTGGAATACCGAAAAGGGTTAGTTACCGAGAATTCATCTCACAAGTACAAGGCAGCACTGACTTGTTTAAGGGATTCTGTATTGATGTATTTCTTTCTGCTGTGAACTTATTGCCCTATGCTGTCCCCTATAAATTTATCCCATTTGGTGATGGTCACAGCAATCCTGATAACACTGAGCTTGTTCGTCTGATCACAGCGGGTGTCTTTGATGCTGCAGTAGGTGACATTACCATTACAACAGAAAGAACAAAGATGGTGGATTTTACTCAGCCATTTATCGAGTCTGGCCTAGTAGTAGTTGCACCAGTTAGGAAGTTGGAATCTAATGCATGGGCCTTTCTGAGGCCATTTACACCAATAATGTGGTGTGTCACAGGGATCTTTTTCTTAGTGGTGGGAGCAGTTGTTTGGATCTTGGAGCATAGGCTGAATGATGATTTTAGGGGACCTCCCAAAAAACAAGTAGTGACAATTTTGTGGTTTAGTTTTTCGACTATGTTCTTTGCCCACAAGGAAAATACAGTGAGCACACTTGGTCGCTTCGTGCTACTTATATGGCTATTTGTGGTTCTTATAATTAATTCAAGCTACACAGCAAGTCTGACCTCAATCCTCACAGTACAACAGCTTTCTTCTCCCATTAAAGGCATCGAAAGTTTAATAAATAGCAAAGAGCCTGTTGGCTACTTGCAGGGTTCTTTTGCACGAAATTATTTAGTTGAGGAACTTGGTATTCATGAATCAAGACTTGTTCCTCTGAAAACACCAGATGATACTGCTAAAGCATTGAAGGATGGTCCCAAAAAGGGTGGTGTTGCTGCATATGTCGATGAGCGTGCTTTCATAGAGCTCTTCCTTTCAAGCCGGTGTGATTTTACTATTGTTGGTCAGGAGTTTACCAGAAATGGTTGGGGATTTCCTTTTCCAAGAGACTCTCCTTTAGCAGTTGACCTGTCAACTGCCATTCTGGAATTAACAGAGAATGGAGATCTTCAAAGGATCCATGACAAATGGCTTCTGAGTAGTGCTTGCCTAGCACAAGGAGCAAAGCTTGAAGTGGACAGACTCGAACTTAAAGCCTTCTGGGGCCTCTATTTAGTATGTGGGTTTGCTTGCTTGCTTGCTCTCCTCATCTATTTTATACAGATGATGAGGCAGTACAACAAACACTACCGCGAGGAACGCAACTCTTCTGCGCAGAGTTCAGTATCTTCGCACCTTCGGACATTCTTGTCATTTGCAGATGAAAAAGAAGAGGAAGTTAAGCACCGGTCCAAGAGACGGCAGATGGAAAGAATGTCATACAGAAGCAACAGGGAGGGAGGATCATTATCATCATCAACCACAAACTCCAACAAATATGCTCAATCTTCTTCAAATAAAAGCATAGATTGTGGTGATTTAGCCTGA 2832 0.4237 MIGVWLVVLMILSNGLCSSGVGMNNSAIPEFVNIGALFSFNTSVGRTAKLAIKAAVEDINSDPSILGKTKLRVSMQEDSKYRGFLSIAEVLQLMSRHTVAIIGPQASTTAHVISHVANELQVPLLSFSATDPTLSSLQFPFFVRTAPSDIYQMTAIAELVDYYGWKEVIAIYVDDDHGRNGIGALGDQLAERRCKISYKAPMTPEATREEITDVLVQVALAESRIIVLHTNVAWGPKVFNVAKYLGMMGTGYVWIATNFLTTVLDSDSPLLSDEKEEIQGVLTLRVHTADSEFKRRFISRWKNLTSGMTASGPLGLSTVGLYAYDTVYVLACALDTFFKQGNRITFSYDSKLSQLRGDSLHLDAVKIFDQGTLLRKIIYGVNMTGITGQIKYTSDGNLVNPSYEIVNVIGTGARRIGYWSNYSGLSVVPPEALYSRPANHSSANQKVLPVIWPGETTQKPRGWVFPNNGRHLRIGIPKRVSYREFISQVQGSTDLFKGFCIDVFLSAVNLLPYAVPYKFIPFGDGHSNPDNTELVRLITAGVFDAAVGDITITTERTKMVDFTQPFIESGLVVVAPVRKLESNAWAFLRPFTPIMWCVTGIFFLVVGAVVWILEHRLNDDFRGPPKKQVVTILWFSFSTMFFAHKENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLINSKEPVGYLQGSFARNYLVEELGIHESRLVPLKTPDDTAKALKDGPKKGGVAAYVDERAFIELFLSSRCDFTIVGQEFTRNGWGFPFPRDSPLAVDLSTAILELTENGDLQRIHDKWLLSSACLAQGAKLEVDRLELKAFWGLYLVCGFACLLALLIYFIQMMRQYNKHYREERNSSAQSSVSSHLRTFLSFADEKEEEVKHRSKRRQMERMSYRSNREGGSLSSSTTNSNKYAQSSSNKSIDCGDLA 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0822 943 PIRSF IGluLR_plant 1 941 IPR017103 -
Dere13g0822 943 Pfam Ligand-gated ion channel 814 846 IPR001320 GO:0015276|GO:0016020
Dere13g0822 943 SUPERFAMILY Periplasmic binding protein-like II 448 815 - -
Dere13g0822 943 Pfam Bacterial extracellular solute-binding proteins, family 3 530 813 IPR001638 -
Dere13g0822 943 FunFam Glutamate receptor 584 714 - -
Dere13g0822 943 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Dere13g0822 943 Gene3D - 148 425 - -
Dere13g0822 943 FunFam Glutamate receptor 467 584 - -
Dere13g0822 943 FunFam Glutamate receptor 148 303 - -
Dere13g0822 943 Gene3D - 584 710 - -
Dere13g0822 943 SMART GluR_14 473 815 IPR001320 GO:0015276|GO:0016020
Dere13g0822 943 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 881 IPR015683 -
Dere13g0822 943 Gene3D - 50 400 - -
Dere13g0822 943 FunFam Glutamate receptor 710 817 - -
Dere13g0822 943 SUPERFAMILY Periplasmic binding protein-like I 27 464 IPR028082 -
Dere13g0822 943 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Dere13g0822 943 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 323 335 - -
Dere13g0822 943 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 106 134 - -
Dere13g0822 943 MobiDBLite consensus disorder prediction 910 943 - -
Dere13g0822 943 CDD GluR_Plant 472 813 - -
Dere13g0822 943 MobiDBLite consensus disorder prediction 895 909 - -
Dere13g0822 943 Gene3D - 756 820 - -
Dere13g0822 943 MobiDBLite consensus disorder prediction 895 943 - -
Dere13g0822 943 Pfam Receptor family ligand binding region 49 410 IPR001828 -
Dere13g0822 943 Gene3D - 468 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0822 Dere-ChrDere13 10191747 10195829 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0822 5 908 Ion Channels AT3G51480 60.639 0.0 1167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1195 09 15723659 15728653 Dere13g0822 13 10191747 10195829 CCT
Dere13g0822 13 10191747 10195829 Dere13g0822 13 10191747 10195829 ECH
Dere13g0822 13 10191747 10195829 Dere09g1195 09 15723659 15728653 ECH