Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0821 ATGAAGAAAGTTTGGTTTCTTGTGCTTGTGATTTTCCACTGCGGCATTTCTTCAAACGGATTGAGTGGTGTTCCCGCAAAATCCAGATCAGTTAACATTGGGGCACTTTTATCTTTCAATTCAACCATTGGCAAAGTGGCAAGAGTTGCAATAGATGCAGCAGTGAATGATATAAACTCCAATCAAGTTGTTCTCAAAGGAACTAGACTCAATATTTCGATGCAGGACACAAAATTCTCAACTGGATTTCTAGGCATCATTGATTCATTATTATTGATGGAGAAAGACACAGTAGCCATAATTGGCCCTCAGTACTCAGTCATGGCTCATGTGATTTCACACATAGCTAATGAGCTGCAAGTACCTTTACTATCATTTGCAGCAACAGACCCAACCTTGACTTCTCTTCAATTCCCATACTTTGTTAGGACAACACAGAGTGATCTGCTTCAGATGGCTGCTGTGGCAGAAATTATTAACTACTATCAGTGGAGAGATGTGATAGCGATCTTCATCGATGATGATCATGGAAGAAATGGGATAGCCACATTAGGGGATAAGCTAGCTGAGAAACGTTGTAAAATCTCATACAAAGCACCCCTTAGGCCCAATAACATAAGCAGGGAAGAGATAAACAGTGCACTATATAAGATAGCTATGATGGAGTCAAGGGTTATAGTCCTCCACATATACCCTGGTTTTGGCCTTGATGTACTTCATGTGGCTCAGACACTTGGCATGATGGGAAGTGGGTATGTCTGGTTAGCCACTGATTGGCTTTCTACCACACTTGACACTGACCCATCTGGGTCCTCTTCACACATGAATGACCTCCAAGGTGTTATAACCTTGAGAATGTACACACCAGATTCTGAACTCAAAAGAAATTTCACTTCTAGATGGAGTTACTTAACAAAAGGGTCTGATCAGGGTCCTTTTGGGTTGAACGCTTATGGCCTTTACGCCTATGACACTGTTTGGATCCTTGCATATGCACTTGATTCATTCTTCAATAGTGGAGGAACCTTGTCATTTTCAAATGATTCAAGTCTAAACATACTAAAAGGGGATAGCCTCCAACTAAATACGATAGGGGTCTTTGACAATGGTAGTTCATTGCTGGAAAACCTTTTGAAGGTCAATAGAACTGGTTTAACAGGCCAAATGATGCTTAGTTCAGATGGGGAGCTTATTAATCCTGCATATGAAGTTATTAATGTGATAGGCACTGGGATTAGGAGGATTGGCTTTTGGTCCAATTCCTCTGGCCTTCACACTGGACAAGCACCTGATCATTCAAATTCAAGTAAAGGGCTCTATGGCGTGATATGGCCTGGTCAAACAACTATAACACCTCGTGGTTGGGTTTTTGCCAGCAATGTAAACCATTTGAGAATTGGAGTGCCTCTCCGAATCAGTTACCGCGAATTCGTGTCAAAAATCGAAGGATCTGAAATGTTTGGAGGTTACTGTGTTGATGTGTTCACTGCTGCACTGGACTTGTTGCCTTATCCAGTTCCATACAAGTTCATTCCATTTGGGGATGGTCGAACCAACCCATTAAACACAGAGCTTCTGCACAAAATCACAACTGGTGATTTTGATGCTGTGGTAGGTGACATCACCATTACCACAAACAGGACAAAGATAGTGGACTTCACACAGCCATATATAGAGTCTGGGCTCGTTGTTGTGGCACCTATCAGGAAGCTGAACTCTAGTGCTTGGGCTTTCCTGAGACCATTCACTCCAATGATGTGGTTTGTGACCGGTATGTTTTTCTTTGTTGTGGGAGCTGTTGTGTGGGTTTTAGAGCGAAGGGTAAACGATGATTTTAGAGGTCCTGCTAGAAGACAGCTTGTCACCATTATATGGTTTAGCTTTTCAACCCTTTTTTTTGCGCATAGGGAGAGAACAGTGAGCACACTTGGTCGCCTAGTGCTAATCATATGGCTTTTCGTGGTTCTAATTCTGAACTCGAGCTACATCGCAAGTCTGACCTCCATTCTCACAGTGGAACAGCTATCTTCTCCGGTGAAGGGAATCGAAACCCTAGTGACAAGCCACGAGCTGATCGGATTTCTGCGAGGTTCGTTCGCTGAGAACTATTTGACAGATGAGCTCAACATTCTGAAATCAAGGCTCGTCCCTCTCAATTCTCCGTCGGAATACGAGAAGGCGTTGAAGGATGGACCTGCCAATGGCGGTGTCGCTGCGATAATCGATGAACGAGCGTACATGGAGCTCTTCCTCGCAACCAGATGCGAGTACGGTATTGTTGGTCAAGAGTTCACGAAAATGGGATGGGGTTTTGCCTTCCCAAGGGACTCTCCCTTAGCCATAGACCTATCAACAGCGATCCTAAAGTTATCAGAGAACGGCGATCTCCAGAGGATTCACGACAAATGGCTTTCCCGAAGCGCATGCAGCTCGGAAGGCGCGAAGCAAGGCGTGGACAGGCTAGAGCTCACGAGCTTCTGGGGTCTCTTCCTTCTCTGCGGCATCGCCTGCTTCATGGCCCTCCTCTGCTATGTCTCTCGCATGGCCTACCGCTTCAGTCGTCACTCTGATCGCAACCTCGACGGCTCCACGTCACGCTCAGCCCGGCTTCGGTCGTTCCTCTCCTTTGTGAATGAGAAGGAGGAGGAAGAGACTAAGAACAACAAGTCCAAGAGAAGCAGAAAAGAGAGAGGGTCTTCCAGAAGGGTGGTGCATGAAGATATTGGGAGTATTGGGTCAATGGATGGCTCTAATGGTGTTGTTCGTTAG 2769 0.4514 MKKVWFLVLVIFHCGISSNGLSGVPAKSRSVNIGALLSFNSTIGKVARVAIDAAVNDINSNQVVLKGTRLNISMQDTKFSTGFLGIIDSLLLMEKDTVAIIGPQYSVMAHVISHIANELQVPLLSFAATDPTLTSLQFPYFVRTTQSDLLQMAAVAEIINYYQWRDVIAIFIDDDHGRNGIATLGDKLAEKRCKISYKAPLRPNNISREEINSALYKIAMMESRVIVLHIYPGFGLDVLHVAQTLGMMGSGYVWLATDWLSTTLDTDPSGSSSHMNDLQGVITLRMYTPDSELKRNFTSRWSYLTKGSDQGPFGLNAYGLYAYDTVWILAYALDSFFNSGGTLSFSNDSSLNILKGDSLQLNTIGVFDNGSSLLENLLKVNRTGLTGQMMLSSDGELINPAYEVINVIGTGIRRIGFWSNSSGLHTGQAPDHSNSSKGLYGVIWPGQTTITPRGWVFASNVNHLRIGVPLRISYREFVSKIEGSEMFGGYCVDVFTAALDLLPYPVPYKFIPFGDGRTNPLNTELLHKITTGDFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKLNSSAWAFLRPFTPMMWFVTGMFFFVVGAVVWVLERRVNDDFRGPARRQLVTIIWFSFSTLFFAHRERTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSPVKGIETLVTSHELIGFLRGSFAENYLTDELNILKSRLVPLNSPSEYEKALKDGPANGGVAAIIDERAYMELFLATRCEYGIVGQEFTKMGWGFAFPRDSPLAIDLSTAILKLSENGDLQRIHDKWLSRSACSSEGAKQGVDRLELTSFWGLFLLCGIACFMALLCYVSRMAYRFSRHSDRNLDGSTSRSARLRSFLSFVNEKEEEETKNNKSKRSRKERGSSRRVVHEDIGSIGSMDGSNGVVR 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0821 922 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 31 883 IPR015683 -
Dere13g0821 922 Pfam Bacterial extracellular solute-binding proteins, family 3 522 805 IPR001638 -
Dere13g0821 922 MobiDBLite consensus disorder prediction 881 922 - -
Dere13g0821 922 FunFam Glutamate receptor 701 808 - -
Dere13g0821 922 Pfam Ligand-gated ion channel 806 837 IPR001320 GO:0015276|GO:0016020
Dere13g0821 922 Gene3D - 49 399 - -
Dere13g0821 922 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Dere13g0821 922 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 44 60 - -
Dere13g0821 922 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 322 334 - -
Dere13g0821 922 CDD GluR_Plant 464 804 - -
Dere13g0821 922 FunFam Glutamate receptor 459 575 - -
Dere13g0821 922 Pfam Receptor family ligand binding region 49 409 IPR001828 -
Dere13g0821 922 PIRSF IGluLR_plant 1 914 IPR017103 -
Dere13g0821 922 Gene3D - 460 574 - -
Dere13g0821 922 Gene3D - 147 424 - -
Dere13g0821 922 FunFam Glutamate receptor 575 705 - -
Dere13g0821 922 Gene3D - 722 811 - -
Dere13g0821 922 Gene3D - 575 703 - -
Dere13g0821 922 SMART GluR_14 465 806 IPR001320 GO:0015276|GO:0016020
Dere13g0821 922 SUPERFAMILY Periplasmic binding protein-like II 440 806 - -
Dere13g0821 922 CDD PBP1_GABAb_receptor_plant 32 424 IPR044440 -
Dere13g0821 922 FunFam Glutamate receptor 147 302 - -
Dere13g0821 922 SUPERFAMILY Periplasmic binding protein-like I 27 455 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0821 Dere-ChrDere13 10163321 10168322 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0821 1 891 Ion Channels AT1G42540 58.114 0.0 1082