Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0820 ATGATGAAAGTTTGGTTTCTTGTCCTAATGATTTTCCACTGCGGCATTTCTTCAAACGGATTGAGTGGTGTTCCTGCAAAATCCAGATCAGTTAACATTGGGGCACTTTTATCTTTCAATTCAACCATTGGCAAAGTGGCAAGAGTTGCAATAGATGCAGCAGTGAATGATATAAACTCCAATCAAGTTGTTCTCAAAGGAACTAGACTCAATATTTCGATGCAGGACACAAAATTCTCCACTGGATTTCTAGGCATCATTGATTCATTATTATTGATGGAGAAAGACACAGTAGCCATAATTGGCCCTCAGTACTCAGTCATGGCTCATGTGATTTCACACATAGCTAATGAGCTGCAAGTACCTTTACTATCATTTGCAGCAACAGACCCAACCTTGTCTTCTCTTCAATTCCCATACTTTGTTAGGACAACACAGAGTGATCTGCTTCAGATGGCTGCTGTGGCAGAAATTGTTAACTACTATCAGTGGAGAGATGTGATAGCGATCTTCATCGATGATGATCATGGAAGAAATGGGATAGCCACATTAGGGGATAAGCTAGCTGAGAAACGTTGTAAAATCTCATACAAAGCACCCCTTAGGCCTAATAACATAAGCACGGAAGAGATAAACAGTGCACTAGTTAATGTAGCTTTAATGGAGTCTAAGGTTATAGTTCTCCACATATACCCCGGTTTTGGCCTTGATGTACTTCATGTGGCTCAGACACTTGGCATGATGGGAAGTGGGTATGTCTGGTTAGCCACTGATTGGCTTTCTACCACACTTGACACTGACCCATCTAGGTCCTCTTCGCACATGAATGACCTCCAAGGTGTTATAACCTTGAGAATGTACACACCAGATTCTGAACTCAAAAGAAATTTCACTTCTAGATGGAGTTACTTAACAAAAGGGTCTGATCAGGGTCCTTTTGGTTTGAACGCTTATGGCCTTTACGCCTATGATACTGTTTGGATCCTTGCATATGCACTTGATTCATTCTTCAATAGTGGAGGAACCTTGTCATTTTCAAATGATTCAAGTCTAAACATACTAAAAGGGGATAGCCTCCAACTAAATACGATAGGGGTCTTTGACAATGGTAGTTCATTGCTGGAAAACCTTTTGAAGGTCAATAGAACTGGTTTAACAGGCCAAATGATGCTTAGTTCAGGTGGGGAGCTTATTAATCCTGCATATGAAGTTATTAATGTGATAGGCACTGGGATTAGGAGGATTGGCTTTTGGTCCAATTCCTCTGGCCTTCACACTGGACAAGCACCTGATCATTCAAATTCAAGTAAAGGGCTCTATGGCGTGATATGGCCTGGTCAAACAACTATAACACCTCGTGGTTGGGATTTTGCCAGCAAAGCAAGGCCTTTGAGAATTGGAGTGCCTCTCAGAATCAGTTATCGCGAATTCGTGTCAAAAATCGAAGGATCTGAAATGTTTGGAGGTTACTGTGTTGATGTGTTCACTGCTGCACTGGACTTGTTGCCTCATCCAGTTCGATACAAGTTCATTCCATTTGGGGATGGTCGAACCAACCCATTAAACTCAGAGCTTCTGCACAAAATCACAACTGGTGATTTTGATGCTGTGGTAGGTGACATCACCATTACCACAAACAGGACAAAGATAGTGGACTTCACACAGCCATATATAGAGTCTGGGCTCGTTGTTGTGGCACCTATCAGGAAGCTGAACTCTAGTGCCTGGGCTTTCCTGAGACCATTTACTCCAATGATGTGGTCTGTGACTGGTATGTTTTTCTTTGTTGTTGGAGCTGTTGTGTGGGTTTTAGAGCGAAGGGTAAACGATGATTTTAGAGGTCCTGCTAGAAGACAGTTTGTCACCATTATATGTTTTAGCTTTTCAACCTTGTTTTTTGCGCATAGAGAGAGAACAGTGAGCACACTTGGTCGCCTAGTGCTAATCATATGGCTTTTCGTGGTTCTAATTCTGAACTCGAGCTACATCGCAAGTCTGACCTCCATTCTCACAGTGGAACAGCTATCTTCTCCGGTAAAGGGAATCGAAACCCTAGTGACGAGCCACGAGCTGATCGGATTTCTGCGAGGTTCGTTCGCTGAGAACTATTTGACAGATGAGCTCAACATTCTGAAATCAAGGCTCGTCCCTCTCAATTCTCCGTCGGAATACGAGAAAGCGTTGAAGGATGGACCTGCCAATGGCGGTGTCGCTGCGATAATCGACGAACGAGCGTACATGGAGCTCTTCCTCGCAACCAGATGCGAGTACGGTATTGTTGGTCAAGAGTTCACGAAAATGGGATGGGGTTTTGCCTTCCCAAGGGACTCTCCCTTAGCCATAGATGTATCAACAACGATCCTAAAGCTATCAGAGAATGGCAATCTCCAGAGGATTCATGACAAATGGCTTTCCCGAAGCGCATGCAGCTCCGAAGGCGCAAAACAAGGCGTGGATAGGTTGGAGCTCAAGAGCTTTTGGGGTCTCTTCCTTCTCTGCGGCATTGCCTGCTTCCTGGCCCTCCTCTGCTATGTCTCTCGCATGGCCTACCGCTTCAACCGCCACTCCGACTGCAACCTCGATGGCTCCACATCGCGATCGGCCCGACTTCGGTCGTTCCTCTCCTTTGTGAATGAGAAGGAGGAGGAAGGGACTAAGAACAACAGGTCCAAGAGAAGTAGGAAGGAGAGAGGGTCTTCCAGAATGGTGGTGCATGAAGATATTGGGAGTATTGGGACAATGGATGCCTCTAATGGTGTTATTCATTATGACAATGCTTTGCAATGTTAA 2790 0.4452 MMKVWFLVLMIFHCGISSNGLSGVPAKSRSVNIGALLSFNSTIGKVARVAIDAAVNDINSNQVVLKGTRLNISMQDTKFSTGFLGIIDSLLLMEKDTVAIIGPQYSVMAHVISHIANELQVPLLSFAATDPTLSSLQFPYFVRTTQSDLLQMAAVAEIVNYYQWRDVIAIFIDDDHGRNGIATLGDKLAEKRCKISYKAPLRPNNISTEEINSALVNVALMESKVIVLHIYPGFGLDVLHVAQTLGMMGSGYVWLATDWLSTTLDTDPSRSSSHMNDLQGVITLRMYTPDSELKRNFTSRWSYLTKGSDQGPFGLNAYGLYAYDTVWILAYALDSFFNSGGTLSFSNDSSLNILKGDSLQLNTIGVFDNGSSLLENLLKVNRTGLTGQMMLSSGGELINPAYEVINVIGTGIRRIGFWSNSSGLHTGQAPDHSNSSKGLYGVIWPGQTTITPRGWDFASKARPLRIGVPLRISYREFVSKIEGSEMFGGYCVDVFTAALDLLPHPVRYKFIPFGDGRTNPLNSELLHKITTGDFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKLNSSAWAFLRPFTPMMWSVTGMFFFVVGAVVWVLERRVNDDFRGPARRQFVTIICFSFSTLFFAHRERTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSPVKGIETLVTSHELIGFLRGSFAENYLTDELNILKSRLVPLNSPSEYEKALKDGPANGGVAAIIDERAYMELFLATRCEYGIVGQEFTKMGWGFAFPRDSPLAIDVSTTILKLSENGNLQRIHDKWLSRSACSSEGAKQGVDRLELKSFWGLFLLCGIACFLALLCYVSRMAYRFNRHSDCNLDGSTSRSARLRSFLSFVNEKEEEGTKNNRSKRSRKERGSSRMVVHEDIGSIGTMDASNGVIHYDNALQC 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0820 929 Gene3D - 49 399 - -
Dere13g0820 929 SMART GluR_14 465 806 IPR001320 GO:0015276|GO:0016020
Dere13g0820 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Dere13g0820 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 44 60 - -
Dere13g0820 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 322 334 - -
Dere13g0820 929 CDD GluR_Plant 462 804 - -
Dere13g0820 929 Gene3D - 575 703 - -
Dere13g0820 929 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 31 883 IPR015683 -
Dere13g0820 929 SUPERFAMILY Periplasmic binding protein-like II 440 806 - -
Dere13g0820 929 Gene3D - 147 424 - -
Dere13g0820 929 Gene3D - 455 574 - -
Dere13g0820 929 Pfam Receptor family ligand binding region 49 409 IPR001828 -
Dere13g0820 929 Pfam Bacterial extracellular solute-binding proteins, family 3 522 805 IPR001638 -
Dere13g0820 929 FunFam Glutamate receptor 575 705 - -
Dere13g0820 929 MobiDBLite consensus disorder prediction 881 902 - -
Dere13g0820 929 SUPERFAMILY Periplasmic binding protein-like I 27 455 IPR028082 -
Dere13g0820 929 PIRSF IGluLR_plant 1 917 IPR017103 -
Dere13g0820 929 FunFam Glutamate receptor 147 302 - -
Dere13g0820 929 FunFam Glutamate receptor 701 808 - -
Dere13g0820 929 CDD PBP1_GABAb_receptor_plant 32 424 IPR044440 -
Dere13g0820 929 Pfam Ligand-gated ion channel 806 837 IPR001320 GO:0015276|GO:0016020
Dere13g0820 929 Gene3D - 722 811 - -
Dere13g0820 929 FunFam Glutamate receptor 459 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0820 Dere-ChrDere13 10149460 10154459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0820 1 891 Ion Channels AT1G42540 57.018 0.0 1056