Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0818 ATGTCTTGCTCATCGTCATCAGGGTCGGAAGAAGAGGATGAGGGCTTCGACTCCTACAGAAAAGGAGGCTACCACGCCGTCAGGGTCGGCGATCAGTTTGCCGGTGGTCGGTACATAGCACAGAGGAAGCTAGGTTGGGGTCAATTTTCCACTGTCTGGCTCGCTTACGATACACGCGATTCTACTTATGTTGCTCTCAAGATCCAGAAAAGTGCAGCCCAGTTTGCTCAGGCTGCCCTTCATGAGATCAATGTTCTTTCATCCATTGCTGAGGGGGACCCTTCGAATTCAAAGTGTGTTGCCCAATTAATTGACCACTTTAAGCACTCAGGCCCAAATGGGCAGCATTATTGCATGGTCCTTGAGTTCCTTGGTGATAGCTTGCTTCGTCTGATCAGATATAACCGTTACAAAGGTCTTCCACTGGATAAAGTCAGAGAAATTTGCAGATGCATTTTGATTGGTTTGGATTACTTGCATAGAGAACTTGGTATAATCCACTCTGACCTAAAACCTGAAAACATTCTTCTCGTCTCCACCATTGATCCTGCCAAAGACCCTGTTAGATCTGGACTAAGCCCAATTCTAGAGAGGCCTGAGGGAAGCATAAATAGTGGAGTCTCAAGTCTTATTGAGAAAAAGTTGAAAAGGAGAGCAAGGAGAGCAGTTGCTAAAATATCAGGAAGATCATCATTGGGAGGAACAGGAGAGGTTTCAAAATCTGATAGAAATATTGATGGGATTGATGTGAAATGCAAGATTGTAGATTTTGGAAATGCATGTTGGGCAGATAAGCCATTTGCAGAAGAAATCCAGACAAGGCAGTACAGAGCACCTGAAGTTATACTGCAGGCTGGGTATTCCTTCTCTGTTGACATGTGGTCTTTTGCATGCATTGCTTTTGAGCTTGCCACTGGTGATATGATGTTTACTCCCAAGTCAGGACAAGGTTTTAGTGAGGATGAGGACCACCTTGCCCTTATGATGGAACTCCTTGGAAAGATACCCCGGAAGGTTGCTATTACTGGAGCAAAATCCAAGGATTTCTTTGACAGGCATGGAGATCTAAAAAGAATTAGGAGGCTAAAATTCTGGCCACTTGACAAATTTTTTATTGATAAATACAAATTTTCAGAGAATGATGCTCGTGAGTTTTCAGAATTTCTTTTAGCCCTTCTGGATTTTTTACCAGAGAAGCGTCCAACTGCGCAGCAGTGCTTGCAACACCCATGGCTTAATGTCAAGCCAACTCCAAGTAATGAGAAATAA 1269 0.4366 MSCSSSSGSEEEDEGFDSYRKGGYHAVRVGDQFAGGRYIAQRKLGWGQFSTVWLAYDTRDSTYVALKIQKSAAQFAQAALHEINVLSSIAEGDPSNSKCVAQLIDHFKHSGPNGQHYCMVLEFLGDSLLRLIRYNRYKGLPLDKVREICRCILIGLDYLHRELGIIHSDLKPENILLVSTIDPAKDPVRSGLSPILERPEGSINSGVSSLIEKKLKRRARRAVAKISGRSSLGGTGEVSKSDRNIDGIDVKCKIVDFGNACWADKPFAEEIQTRQYRAPEVILQAGYSFSVDMWSFACIAFELATGDMMFTPKSGQGFSEDEDHLALMMELLGKIPRKVAITGAKSKDFFDRHGDLKRIRRLKFWPLDKFFIDKYKFSENDAREFSEFLLALLDFLPEKRPTAQQCLQHPWLNVKPTPSNEK 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0818 422 FunFam Protein kinase superfamily protein 24 123 - -
Dere13g0818 422 Pfam Protein kinase domain 250 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0818 422 Pfam Protein kinase domain 39 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0818 422 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Dere13g0818 422 SMART serkin_6 38 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0818 422 SUPERFAMILY Protein kinase-like (PK-like) 32 413 IPR011009 -
Dere13g0818 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Dere13g0818 422 CDD STKc_SRPK 27 412 - -
Dere13g0818 422 ProSiteProfiles Protein kinase domain profile. 38 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0818 422 FunFam Serine/threonine-protein kinase SRPK 116 412 - -
Dere13g0818 422 Gene3D Transferase(Phosphotransferase) domain 1 92 412 - -
Dere13g0818 422 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Dere13g0818 422 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 8 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0818 Dere-ChrDere13 10092914 10096418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0818 4 416 EF-hand Containing Proteins AT5G22840 53.017 3.58e-172 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Dere13g0818 Pkinase 8.1e-23 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1190 09 15675507 15679460 Dere13g0818 13 10092914 10096418 CCT