Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0812 ATGGGTCTCTGCTTGGGTTCTATCGCTCACCGTCAACAAGAGACTACCCTTAATAGACCTCAATATTCAGGATCCACGGGTCCTGAGAGTAAGAATGTAGGTTCCTCCACAACAAACAGCACTACAGAAAAGAGTCAATTTTCGATCATGGCAAATGAAAGCTTTGGCGAGTCCATTGCTTCTCCAAATGAGCAAGTTATTATAGAAACACCTAATAACTCGAAGGTGTTCAGTTTAGGGGACTTGAAAGCAGCCACGAAGAACTTCAAAGCGGACACATTGCTCGGGGAGGGTGGTTTTGGTAAAGTTTACAGAGGTTGGTTGGATGAGAAGACGCTTTTGCCGGCCAAAGCCGGGTCGGGAATGATAGTCGCTATCAAAAAACTAAAGTCTGAGAGTATGCAAGGCTTTCAAGAGTGGCAGTCAGAAGTGAAATTTCTGGGAAGCCTTTCTCACTCTAACCTGGTCAAGCTATTGGGTTACTGTTGGGAGGATGAGGAGCTTCTCCTTGTTTATGAGTTCATGCCTAAAGGAAGCTTAGAGAATCATCTCTTCAGAAGGAATCCTAACATAGAACCACTTTCTTGGAACACACGACTCAAAATAGCTATTGGTGCAGCTCAGGGCCTATCTTTCTTGCACACTTCAGAAAAGCAAATCATTTACAGAGATTTCAAGGCCTCAAATATACTACTTGATGGAAATTACAATGCAAAAATATCTGATTTTGGCTTGGCTAAATTGGGGCCTACAGGGGGAGAATCACATGTGACTACCAGGATTATGGGCACATATGGCTATGCTGCTCCAGAATACATTGCAACAGGGCATTTATATGTTCAGAGTGATGTGTATGGGTTTGGTGTAGTGCTGCTTGAAATGATGACAGGTTTGAGAGCACATGATACGAAGCGGCCAAACGGGCAGCAAAATCTGGTTGAGTGGGGTAAGCCATGCCTTTCCAATAAAAAAAAGTTGAAAACCATTATGGATACCAAGATAGAAGGCCAATACTCACCCAAGGCAGCATTTCAAGTAGCTCAGATTGTTCTCAAATGCCTAGAACCTGACCCCAGAAAACGTCCTTCTATGATTGATGTGGTGGAGGCATTGGAAGGCATTGAAGCTATCCAAAACAAATCAAAAGAATCCAAGAAATCCCCATCTACAGCTCTTCATCATCCTCCCAGGTCTATTCTTCACCAATCTCCACTTCATGCTCGCCAGAAAGCTGTCGTATGA 1242 0.4364 MGLCLGSIAHRQQETTLNRPQYSGSTGPESKNVGSSTTNSTTEKSQFSIMANESFGESIASPNEQVIIETPNNSKVFSLGDLKAATKNFKADTLLGEGGFGKVYRGWLDEKTLLPAKAGSGMIVAIKKLKSESMQGFQEWQSEVKFLGSLSHSNLVKLLGYCWEDEELLLVYEFMPKGSLENHLFRRNPNIEPLSWNTRLKIAIGAAQGLSFLHTSEKQIIYRDFKASNILLDGNYNAKISDFGLAKLGPTGGESHVTTRIMGTYGYAAPEYIATGHLYVQSDVYGFGVVLLEMMTGLRAHDTKRPNGQQNLVEWGKPCLSNKKKLKTIMDTKIEGQYSPKAAFQVAQIVLKCLEPDPRKRPSMIDVVEALEGIEAIQNKSKESKKSPSTALHHPPRSILHQSPLHARQKAVV 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0812 413 MobiDBLite consensus disorder prediction 378 413 - -
Dere13g0812 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Dere13g0812 413 FunFam Serine/threonine-protein kinase BIK1 57 174 - -
Dere13g0812 413 ProSiteProfiles Protein kinase domain profile. 89 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0812 413 PANTHER OS01G0588500 PROTEIN-RELATED 43 375 - -
Dere13g0812 413 MobiDBLite consensus disorder prediction 14 44 - -
Dere13g0812 413 Pfam Protein tyrosine and serine/threonine kinase 91 371 IPR001245 GO:0004672|GO:0006468
Dere13g0812 413 SUPERFAMILY Protein kinase-like (PK-like) 65 372 IPR011009 -
Dere13g0812 413 Gene3D Phosphorylase Kinase; domain 1 64 174 - -
Dere13g0812 413 CDD STKc_IRAK 95 374 - -
Dere13g0812 413 Gene3D Transferase(Phosphotransferase) domain 1 175 394 - -
Dere13g0812 413 ProSitePatterns Protein kinases ATP-binding region signature. 95 128 IPR017441 GO:0005524
Dere13g0812 413 FunFam Serine/threonine-protein kinase PBS1 175 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0812 Dere-ChrDere13 10037119 10041030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0812 69 371 Glycoside Hydrolase AT3G07070 50.654 1.91e-103 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dere13g0812 PK_Tyr_Ser-Thr 7.4e-50 CL0016