Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0807 ATGGGAGGTGACGGTGCTGCTGATGATGCGACGGAATCGAAGGGCACTGGTGGAGTGAACATCAACATTCGATGCTCCAATGGTTCCAAGTTTTCGGTTCAGATTGGCCTCGAATCCTCCATCGGATCGTTCAAGGAAGCTGTCGCTCAGAAGTGCGATATCCCATCCGATCAACAGCGGCTGATTTATAAGGGTCGGATCTTAAAGGACGATCAAACCCTGCAAAGCTACGGTTTAGAGGCTGATCACACTGTCCATTTGGTTCGTGGCTTTGCATCAGCTGCACCAACCAATACAACTGGTGGGACCAATGCCACAACAAATAATACAAGAGTTACTGGTGCTACCGAAGGTGGGGGAGGGTCTGCTTTTGGAGCTTCATTGTTTCCTGGACTAGGTCTCAGTGGGACTGGGGGCAGTAGCTTGAATGGCTTATTTGGATCAGGCCTTCCAAATCTTGAACAAATGGAACAACCATTTATTTCGAATCCCAATTTAATGAGAGAAATAATGAACACACCTGCTATGCAGAATCTAATCAATAATCCTGAAATAGTGCGGAATCTCATAATGAGTAACCCACAGATGCAAGAGCTTATGGATCGAAATCCTGAGCTAGCACACATACTTAATGATCCCAATACTCTCCGCCAGACACTTGAAGCGACAAGAAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAACATTGAATCCTCTCCTGAAGGATTTAACATGCTGAGGCGGATGTATGAAAATGTTCAAGAACCATTCTTAAATGCCACAATGATGGCAGGTAATACTGGAAATGACAGCGCTAACCCATTTGCAGCACTGTCTGGGACTCAAGGTGGCCAAGCTAGGAATCAATCAACTAATCCCTCAACTACTAGTTCTGAAGCAACTGCTGGTTCTCCCTCCCCCAATACTAGTCCCCTTCCTAATCCTTGGACCTCTACTGGAACTGGAGGTACCCAAAATAACACAAGGTCAACTAGTGGAGAGAATGCTAGGCCACAGGCACCTACCGGCCTAGGACTTGGTCTGCCGGATCTTGAAGGTATGGCAAGTGCTATGCCAGATCCCACTATGTTGACCCAATTAATGCAAAACCCTGCTATTTCACAAATGATGCAAAGTATCCTTTCCAACCCACAGGCTATGAATCAGATCCTTGGTGTTAATGCTGAGCAGCGTGGCATGCCTGATTTTAATTCTCATCTTAGACAAATGATGCAAAACCCAGAGTTCCTTCGCATGCTTTCTTCACCTGAGACAATGCAGCAACTCTTGTCTTTTCAGCAAGCTCTTTTGTCTCAGCTTGGTCAGCAACAGTCATCACAGGAATCAGGTCAAACTGGCAGAGGCACTGGAACAATAAACAACTTGGGGTTGGAGATGTTGTCAAATATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCAGTTCCAAATAGATCTGATGAGCCCCCAGAGCAACTGTATGCCACCCAACTTTCACAACTTCAAGAGATGGGCTTCTTCGACACACAAGAAAACATGAGGGCTCTTATTGCCACTTCAGGTAATGTTCATGCAGCGGTTGAACGGCTTCTGGGGAACTCAGGTCAGTAG 1629 0.4622 MGGDGAADDATESKGTGGVNINIRCSNGSKFSVQIGLESSIGSFKEAVAQKCDIPSDQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFASAAPTNTTGGTNATTNNTRVTGATEGGGGSAFGASLFPGLGLSGTGGSSLNGLFGSGLPNLEQMEQPFISNPNLMREIMNTPAMQNLINNPEIVRNLIMSNPQMQELMDRNPELAHILNDPNTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATMMAGNTGNDSANPFAALSGTQGGQARNQSTNPSTTSSEATAGSPSPNTSPLPNPWTSTGTGGTQNNTRSTSGENARPQAPTGLGLGLPDLEGMASAMPDPTMLTQLMQNPAISQMMQSILSNPQAMNQILGVNAEQRGMPDFNSHLRQMMQNPEFLRMLSSPETMQQLLSFQQALLSQLGQQQSSQESGQTGRGTGTINNLGLEMLSNMFGGLGAGSLAVPNRSDEPPEQLYATQLSQLQEMGFFDTQENMRALIATSGNVHAAVERLLGNSGQ 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0807 542 PRINTS Ubiquitin signature 71 92 IPR019956 -
Dere13g0807 542 PRINTS Ubiquitin signature 50 70 IPR019956 -
Dere13g0807 542 ProSiteProfiles Ubiquitin domain profile. 19 88 IPR000626 GO:0005515
Dere13g0807 542 MobiDBLite consensus disorder prediction 94 116 - -
Dere13g0807 542 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 494 539 IPR015940 -
Dere13g0807 542 SMART uba_6 500 538 IPR015940 -
Dere13g0807 542 CDD Ubl_Dsk2p_like 19 91 - -
Dere13g0807 542 Gene3D - 7 102 - -
Dere13g0807 542 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Dere13g0807 542 CDD UBA_PLICs 500 538 - -
Dere13g0807 542 SMART CBM 401 436 IPR006636 -
Dere13g0807 542 SMART CBM 143 180 IPR006636 -
Dere13g0807 542 SMART CBM 193 232 IPR006636 -
Dere13g0807 542 SMART CBM 358 397 IPR006636 -
Dere13g0807 542 SUPERFAMILY Ubiquitin-like 13 106 IPR029071 -
Dere13g0807 542 Gene3D - 188 246 - -
Dere13g0807 542 MobiDBLite consensus disorder prediction 94 117 - -
Dere13g0807 542 MobiDBLite consensus disorder prediction 269 345 - -
Dere13g0807 542 FunFam Ubiquitin domain-containing protein DSK2b 190 246 - -
Dere13g0807 542 FunFam Ubiquitin domain-containing protein DSK2b 483 541 - -
Dere13g0807 542 PANTHER UBIQUILIN 14 537 IPR015496 -
Dere13g0807 542 SMART ubq_7 19 90 IPR000626 GO:0005515
Dere13g0807 542 Pfam UBA/TS-N domain 500 536 IPR015940 -
Dere13g0807 542 Gene3D - 482 542 - -
Dere13g0807 542 MobiDBLite consensus disorder prediction 269 353 - -
Dere13g0807 542 FunFam Ubiquitin domain-containing protein DSK2b 16 105 - -
Dere13g0807 542 SUPERFAMILY UBA-like 496 538 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0807 Dere-ChrDere13 10004000 10009032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0807 19 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.857 2.67e-08 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1167 09 15381450 15387018 Dere13g0807 13 10004000 10009032 CCT
Dere13g0807 13 10004000 10009032 Dere13g0807 13 10004000 10009032 ECH