Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0802 ATGGCGAAAAGATCATTCAAAAGCGTAGAAGAAGACGAGGAGGTGGAGGAGGAAGAAGAGAAAGAGAGTGAACTGGAAGAAGGGGTGAATGAGAACAGGAAGAAGATAGTGATAAGGGTGGTTTTTGGTCAAAGGCTGAGAACACCAATGGTTAGTGGGGGTCCATCGTTGTGTTGCCAGGCTGATGAATGTGGGGTGGACCTGAGAATGGCCAAAAAGTATCACCAGAGACACAAGGTTTGCGAGAGACATTCTAAAGCTGCTGTGGTTTTAGTAGGAGGCATTCGTCAGAGGTTCTGCCAACAGTGTAGTAAGTTTCATGAAATTTCACAGTTTGACGACACCAAAAGAAGTTGCAGGGAAAGACTGGCAGGTCATAACGAACGTAGAAGAAAAACCCATACAGAGCTGCACTATGATACTGAACAGATGCCAGAGTCATCTCCAATGAATAGCTCCTCGTTGAAAGCATCAAAGCATCCAAACTTTGGCGTGATAAATATTTGA 507 0.4458 MAKRSFKSVEEDEEVEEEEEKESELEEGVNENRKKIVIRVVFGQRLRTPMVSGGPSLCCQADECGVDLRMAKKYHQRHKVCERHSKAAVVLVGGIRQRFCQQCSKFHEISQFDDTKRSCRERLAGHNERRRKTHTELHYDTEQMPESSPMNSSSLKASKHPNFGVINI 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0802 168 Coils Coil 8 35 - -
Dere13g0802 168 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 48 142 IPR044817 GO:0003677
Dere13g0802 168 MobiDBLite consensus disorder prediction 11 25 - -
Dere13g0802 168 SUPERFAMILY SBT domain 57 137 IPR036893 GO:0003677|GO:0005634
Dere13g0802 168 ProSiteProfiles Zinc finger SBP-type profile. 56 133 IPR004333 GO:0003677
Dere13g0802 168 MobiDBLite consensus disorder prediction 123 141 - -
Dere13g0802 168 MobiDBLite consensus disorder prediction 123 168 - -
Dere13g0802 168 Gene3D - 51 120 IPR036893 GO:0003677|GO:0005634
Dere13g0802 168 MobiDBLite consensus disorder prediction 1 28 - -
Dere13g0802 168 MobiDBLite consensus disorder prediction 142 160 - -
Dere13g0802 168 Pfam SBP domain 59 132 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0802 Dere-ChrDere13 9931440 9932458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0802 33 132 SBP-box Gene Family AT3G15270 57.000 6.62e-36 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dere13g0802 SBP 2.1e-31 No_clan