Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0781 ATGGATTTTGTAGCAAATTCATGTCCTTCGCCTTCCTCTTTTCTGGGTTCGTTCGGGAATTTCGTTGAAAGGATGAAAGAAATTAGCACTCTTGCGGTTTCTGCGATCATTGGGAACATCTTATCTGCGATCTTCACCTTCTGCTTTGCCTTAGTGGGAACTCTGTTAGGGGCTATGACTGGAGCTTTGATCGGCCAAGAGACTGAGAGTGGCTTCATTAGAGGAGCTGCTGTAGGAGCCATATCAGGAGCTGTGTTTTCCATTGAAGTGTACGAATCTTCTCTTGTTCTTTGGCAATCTGATGAATCTGGGATTGGGTGTCTCTTATACTTGATTGATGTTATTGCTAGCCTACTAAGTGGGAGACTTGTCCGAGAGAGGATAGGTCCAGCCATGTTAAGTGCTGTCCAAAGTCAGATGGGTGCTATTGAAGCAAGCTTTGATGAGATTCAAAACCTCTTTGACACTGGAGGTGCCAAAGGTTTATCAGGAGATTCAGTTGAGAAAATCCCAAAAATCACAATCACAAGTGACGAAAATGTTGATGCTTGTGGCGAAAGAGTTTCCTGCTCAGTTTGCCTCCAGGATTTTCAGCTCGGAGAGACAGTTAGAAACTTGCCTCATTGTCATCACATGTTTCACCTACCTTGTATAGATAAGTGGCTCTTCAGCCATGGTTCTTGCCCATTGTGCAGAAGGGATCTGTAA 708 0.4421 MDFVANSCPSPSSFLGSFGNFVERMKEISTLAVSAIIGNILSAIFTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVYESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAIEASFDEIQNLFDTGGAKGLSGDSVEKIPKITITSDENVDACGERVSCSVCLQDFQLGETVRNLPHCHHMFHLPCIDKWLFSHGSCPLCRRDL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0781 235 SUPERFAMILY RING/U-box 189 235 - -
Dere13g0781 235 Pfam Ring finger domain 189 232 IPR001841 -
Dere13g0781 235 SMART ring_2 190 231 IPR001841 -
Dere13g0781 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 235 IPR013083 -
Dere13g0781 235 FunFam NEP1-interacting protein-like 1 150 235 - -
Dere13g0781 235 CDD RING-H2_NIPL1-like 189 232 - -
Dere13g0781 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Dere13g0781 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 234 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0781 Dere-ChrDere13 9666492 9668394 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0781 22 235 C3H Transcription Factor Family AT5G66070 76.168 2.11e-117 332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1115 09 14583012 14584495 Dere13g0781 13 9666492 9668394 CCT