Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0771 ATGACTCTCACAGGCTTGGTTTCTATTGTCTTCAATCTGATTGGTCTTGTCCCACACAAGATCAACCAGAAGCCATGTGAATCAGCAGAAGCACCAAGTAGTTTTATCGAGACCATTGAAGTTGGTTGGTGTTGCGTGTGCCTGTCAAGGTTGAAGGAGGAAGAAGAAACTAGGGTTCTTCCTTGCTTGCACAAGTTCCATAAACTGTGTGTAGATAAATGGCTTAATGGTCGCCACAAAACGTGTCCTCTTTGTCGCTTCTCAATGGGAGCAGAAGAGAAGTCACGCTGTGCTGCAGAACCCTTCACTGAAGAGATGGTAATTTGGTTTTCTTCTTTCCATATTGCTGGTATCTGA 357 0.4426 MTLTGLVSIVFNLIGLVPHKINQKPCESAEAPSSFIETIEVGWCCVCLSRLKEEEETRVLPCLHKFHKLCVDKWLNGRHKTCPLCRFSMGAEEKSRCAAEPFTEEMVIWFSSFHIAGI 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0771 118 PANTHER TARGET OF ERK KINASE MPK-1 34 94 - -
Dere13g0771 118 SMART ring_2 44 85 IPR001841 -
Dere13g0771 118 SUPERFAMILY RING/U-box 43 90 - -
Dere13g0771 118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 93 IPR013083 -
Dere13g0771 118 ProSiteProfiles Zinc finger RING-type profile. 44 86 IPR001841 -
Dere13g0771 118 Pfam Ring finger domain 44 86 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0771 Dere-ChrDere13 9548472 9548828 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0771 15 89 C3H Transcription Factor Family AT1G04790 45.333 3.43e-14 65.5