Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0752 ATGGCAGCAGAAAATAAAGACGAAACCTCTTCACAAAGTTCTGTTTCTTCACCTTGTCCAAGCCCTCCAATGGACTCCAAGTTAAGACTTGTGTTAGATAGATTATGGAGGTTTTCTGCTTCTTGGAAGAAAAGAAGCACTCCACGTGCTCGAAGAATTTTCCACAGAGATGTGGAGAAAGAAGAGTTCCAGTATGCCAGTACTCAGTGTCTCTCATCGTACTACAGTGTGTTTGTGGTTCGCCTAGCAATCATGGTCATGTTGGCTTTCTTGATAGGGCTGCTCACTTTACTAACCTGGCATTTCACAAAGATTTATACTAAAAAATCACTGAACAGCTTAGCATATGGCCTTCGTTATGAACTTCTCCAACGTCCCATCTTGCGCATGTGGAATATTTTGAATACTACAGCTGAAATTACAGCAGCTCAAGTCAAGCTGTCTGAGTATGTAATCAGACGACACAGCAACTCTGTCTCTCAAGCAGAACAAGTTGAGCTTTATGAAGCGATGAGGGCTGTGACATGGGCATTATTTGCTAGCAACAAAGCCCTCAATTCGATAACTATCAACTATAGAAACGGATTTGTCCAGGCATTCCATAGAGATCTGAAGGGTAACAACACATTTTACATCTACTCTGATCTTGCAAATTACTCCATAGGTGCTAGTCTACTCTCAACACATCAAGTTTGGAATGATAAAGCCATTCTTGGAAACCATTCTGCCATTTGGTATCGCGAACCACTTGATCCTCTCAGTGGAGAGAAGATTGGAAAAGCTAAGCAAATAGCACCAGAAGACTTGATCAATATCGCGGGCATTTCCCAAGTACCTGATGGTGTAGCTTCATGGCACGTGGCAGTAAGCAAGTTCACAGATTCACCGTTGCTTTCAGCAGCACTTCCAGTTTGGGACTCTTCTAATAAGAGCATTGTGGCTGTTGTGGGTGTCACAACTGCTCTTTATAGTGTAGGGCAGTTGATGAAAGGGCTAGTTGAGCTTCATAGTGGTCATATGTATTTGACTTCACAAGAGGGTTACTTACTTGCCACCTCCACAAATGAACCTCTACTTATAAATTCCACAAAACCCCCCAGGCTTAAGATGGCTGTTGATTGTGAAGATGATATAATACGACTTGGCGCTGAGTGGTTACAGAGAACTTACGGAGACAAGTTTCCTCCAAGTCATGAGGTTCACATAGAGAATGCCTGGCTTGGTCACCAGCAATATTACATTGACTCTTTCTTCCTGAAGTTGAAAAAACTTCCTCTGGTGGGTGTTATCATTATACCAAGAAAGTATATCATGGGAAAGGTAGATGAAAGAGCCTTCAAAACGTTGGTTATTCTGATATCAGCATCGTTGTGTATACTATTCATTGGATGCGTTTGCATTTTGATACTGACAAATGGGGTATCAAAGGAAATGAAACTAAGAGCAGAACTTATCAGTCATCTGGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAACTATAAAAGTCAGTTTCTTGCAAACATGAGTCATGAACTGAGGACTCCTATGGCAGCAGTGATTGGGTTGCTTGACATTCTTATATCTGATGATTGTCTCACAAATGAACAATATGCAACAGTTACTCAGATAAGAAAATGCTCAACTGCCCTGCTCCGTCTTCTTAACAACATATTGGATCTGAGCAAGGTGGAATCAGGAAAATTGGTGCTAGAAGATGAAGAATTTGACTTGCAAAGGGAACTTGAAGGGCTTGTAGATATGTTCTCTGTGCAGTGCATTAACCACAACGTAGAGACTGTTTTAGACCTATCTGATGACATGCCAAAGGTAGTTCGAGGCGATTCCGCAAGGGTAGTTCAAATTTTCGCAAATTTGATCAACAATTCCATTAAGTTTACTCCATCGGGTCACGTTATTCTAAGAGGGTGGTGTGAGAACGCAAATTCTTGTGGTGATAGTGCAAATCTTCCTCTTGATCAGAAGAAACCACGGATGGGACAGAAGACTAGAGTGAAGCAACATGAAAATCACCCAAAGAAAACATCCAAGAAAGAGAACAAAATGGTTCTTTGGTTTGAAGTTGATGACACAGGCTGCGGTATTGATCCAAGTAAATGGGACTCTGTGTTTGAAAGCTTTGAGCAAGCAGATCCCTCAACTACCAGACTGCATGGTGGCACTGGTCTTGGACTTTGCATTGTTAGAACTCTGGTTAATAAGATGGGAGGGGAAATCAAGGTTGTCAGAAAAGAGGGTCCAGGAACTCTGATGCGATTATACCTGCTTCTCAATGCTCACGTGGATGCCACTGAACATCATAGTCGGTTAGATTATGCATACAGTGGCTTAGTGGTATTGCTTGCATTGCCTGGAAACATGAGTCGATTAATCACATCGAAGTGGCTACAGGAAAATGGGGTTTGCACCACAGTGGCATCTGAATGGAATGGACTAACGCAAACCCTTAGAGAACTCTTTCATGCAAGAAGTACGGTTCACAATAATGGCTTTGATACACTTTACAGAGTGAATGAGGGTTTGAAGGCTAAATTGCTCAACATATCAGAGATGAAGAACCCAACTTTTGTCATTGTGGTTGATATAGGATTACTTGACTTGAGCACAGACATATGGAAGGAACAGCTTAACTTCCTTCAAAAGTATTTTGGGAGAGCAAAGTTTGCATGGATGCTAAATCATGACACCTCCAATACCATAAAGATGGAGCTCCGTAGGAAAGGACATATACTGATGATCAATAAACCCCTTTACAAGGCAAAAATGATTCATATTTTGGAAGCTGTCATAAAGGAGAAAAACCTTGAGCTGCAGAAGAAAAATACCTCTACGAAAGAGGGTGATGTGCGCGAGTTTCTTGAGATTGATTCTGTTCATTGTGAAGCTGCTAGCTCCGATGGTTCCGACATATCTGAAATGGGTAGTTCTGATCCTATTAGTAGAGACAATGAAAGAGAATGTATAGCAAAATCCCATCCATCATCAAAGAACCCGATAAGCAACTGCTTGGTTGGGTTAACTGATGAGTGTTTGGAAGATAATAATTATTCAAATAATGAAGAGTCATGTCACAGCAGCCCCCACTCTCATGAAGTCATTGATGGTGCAGAACCAAAAGTAGAATCCACTAAACTGGCATCAATTCCAAGAGAAGTTAATGGGGAAGATTCTGAATTTGGGGAATCTCAGAGAGTTAATAGCTCAAGTAAAGCAGTGAATGGAAACAAATCTCTTGAAGGCCTAAGGATACTGCTTGCTGAAGATAATCCGGTGCTTCAAAGGGTTGCAACCATAATGCTTGAAAGAATGGGAGCTGCAGTTGTTGCCGTAGGTGATGGACAACAGGCAGTGAATGCTCTAAATTGCATGCTCAACACAGAAGATTGCAGAAAGGAGTCTCTTCTGAAGGAGAGGAGCACACGATCTCAAACAGAAATTCTCAGTCGCCCTCCATATGACTTGATTCTAATGGATTGCCAGATGCCAAGAATGGACGGTTATGAGGCAACAAAAACAATAAGGAGATCAGAAGAAGGAACAGAATTGCACATTCCCATAGTTGCTCTTACAGCCCATGCAATGTCATCTGATGAAGCCAAATGCTTGGAGGTGGGTATGGATGCTTACTTAACAAAGCCAATTGACTTCAAGCTGATGATGTCCACCATTCGTTCTCTCACTAAAACATCATCCTGA 3714 0.4173 MAAENKDETSSQSSVSSPCPSPPMDSKLRLVLDRLWRFSASWKKRSTPRARRIFHRDVEKEEFQYASTQCLSSYYSVFVVRLAIMVMLAFLIGLLTLLTWHFTKIYTKKSLNSLAYGLRYELLQRPILRMWNILNTTAEITAAQVKLSEYVIRRHSNSVSQAEQVELYEAMRAVTWALFASNKALNSITINYRNGFVQAFHRDLKGNNTFYIYSDLANYSIGASLLSTHQVWNDKAILGNHSAIWYREPLDPLSGEKIGKAKQIAPEDLINIAGISQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKGLVELHSGHMYLTSQEGYLLATSTNEPLLINSTKPPRLKMAVDCEDDIIRLGAEWLQRTYGDKFPPSHEVHIENAWLGHQQYYIDSFFLKLKKLPLVGVIIIPRKYIMGKVDERAFKTLVILISASLCILFIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDEEFDLQRELEGLVDMFSVQCINHNVETVLDLSDDMPKVVRGDSARVVQIFANLINNSIKFTPSGHVILRGWCENANSCGDSANLPLDQKKPRMGQKTRVKQHENHPKKTSKKENKMVLWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVRKEGPGTLMRLYLLLNAHVDATEHHSRLDYAYSGLVVLLALPGNMSRLITSKWLQENGVCTTVASEWNGLTQTLRELFHARSTVHNNGFDTLYRVNEGLKAKLLNISEMKNPTFVIVVDIGLLDLSTDIWKEQLNFLQKYFGRAKFAWMLNHDTSNTIKMELRRKGHILMINKPLYKAKMIHILEAVIKEKNLELQKKNTSTKEGDVREFLEIDSVHCEAASSDGSDISEMGSSDPISRDNERECIAKSHPSSKNPISNCLVGLTDECLEDNNYSNNEESCHSSPHSHEVIDGAEPKVESTKLASIPREVNGEDSEFGESQRVNSSSKAVNGNKSLEGLRILLAEDNPVLQRVATIMLERMGAAVVAVGDGQQAVNALNCMLNTEDCRKESLLKERSTRSQTEILSRPPYDLILMDCQMPRMDGYEATKTIRRSEEGTELHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDFKLMMSTIRSLTKTSS 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0752 1237 PANTHER TWO-COMPONENT HISTIDINE KINASE 63 769 - -
Dere13g0752 1237 Gene3D - 568 767 IPR036890 -
Dere13g0752 1237 Gene3D - 488 567 - -
Dere13g0752 1237 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 555 761 IPR036890 -
Dere13g0752 1237 PRINTS Bacterial sensor protein C-terminal signature 708 718 IPR004358 GO:0016310|GO:0016772
Dere13g0752 1237 PRINTS Bacterial sensor protein C-terminal signature 725 743 IPR004358 GO:0016310|GO:0016772
Dere13g0752 1237 PRINTS Bacterial sensor protein C-terminal signature 690 704 IPR004358 GO:0016310|GO:0016772
Dere13g0752 1237 Pfam Response regulator receiver domain 1089 1229 IPR001789 GO:0000160
Dere13g0752 1237 FunFam Histidine kinase 1-like protein 488 567 - -
Dere13g0752 1237 SUPERFAMILY CheY-like 1085 1233 IPR011006 -
Dere13g0752 1237 MobiDBLite consensus disorder prediction 1058 1077 - -
Dere13g0752 1237 MobiDBLite consensus disorder prediction 654 683 - -
Dere13g0752 1237 ProSiteProfiles Histidine kinase domain profile. 507 765 IPR005467 -
Dere13g0752 1237 MobiDBLite consensus disorder prediction 1 23 - -
Dere13g0752 1237 SMART REC_2 1087 1229 IPR001789 GO:0000160
Dere13g0752 1237 Pfam His Kinase A (phospho-acceptor) domain 501 566 IPR003661 GO:0000155|GO:0007165
Dere13g0752 1237 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 487 567 IPR036097 GO:0000155|GO:0007165
Dere13g0752 1237 SMART HisKA_10 500 566 IPR003661 GO:0000155|GO:0007165
Dere13g0752 1237 Gene3D - 1066 1235 - -
Dere13g0752 1237 SMART HKATPase_4 613 765 IPR003594 -
Dere13g0752 1237 MobiDBLite consensus disorder prediction 1 21 - -
Dere13g0752 1237 ProSiteProfiles Response regulatory domain profile. 1088 1233 IPR001789 GO:0000160
Dere13g0752 1237 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 613 763 IPR003594 -
Dere13g0752 1237 MobiDBLite consensus disorder prediction 663 683 - -
Dere13g0752 1237 CDD REC_hyHK_CKI1_RcsC-like 1089 1229 - -
Dere13g0752 1237 CDD HisKA 501 562 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0752 Dere-ChrDere13 9429920 9438643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0752 20 1237 Histidine Kinase Gene Family AT2G17820 64.482 0.0 1571
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere13g0752 HATPase_c 2.6e-22 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1064 09 13521038 13528232 Dere13g0752 13 9429920 9438643 CCT
Dere13g0752 13 9429920 9438643 Dere13g0752 13 9429920 9438643 ECH