Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0746 ATGGCATTAAGGTATGAGGTTTCAGTTGTAATGGCGGAGGGGAGATCGACGGGTGTGGTACAATGGTTCAACGATGCTAAAGGCTTTGGCTTTATCAAGCCTGACGATGGAGGGGAGGATCTCTTTGTTCATCAATCTTCGATCAGATCCGATGGCTATCGTAGCCTCGTAGAAGGGGATCACGTCGAGTTCTTGATTGCTACAGGTGACAGGGAGAAAACCAAAGCTATTGATGTCACCGGCCCTAACGGAGCTCCTCTACAGTCTAAGAAGGATAATTATGGTGGCCGCGGCGGCGGTGGACGAAGAGGCGGAGATAGGCGCAACGGCGGCGGTGCTGGCTGCTATCAGTGCGGCGATTTTGGGCATTTAGCCAGGGATTGCGACCGGGATAACAGTGCCGGTGGCGGCAGTGCTTGCTTTAATTGTGGTGAAGTTGGGCACTTGGCGAGGGATTGCTCACGAGGAAACAACGGTGGCGGCGGCGGCGGCGGCAGTGGGTCTTGCTTTAGGTGTGGTGAGTATGGGCACATGGCGAGGGATTGCAGCAACAAGGGAAGCGGCGGTGGCGGCGGCGGCGGAGGTTGCTTTAGATGTGGCGAAGTCGGACACTTGGCTAGAGATTGCAGCAAAGAAAGCGGAAGGTTTGGCGGTAGTATTGGGGGAGGTAATGTGAGGAAAAGCACTTGCTTTAACTGTGGGAAACCTGGGCACCTTGCGAGAGAGTGCCTTGAAGACTTCGGATGA 747 0.5489 MALRYEVSVVMAEGRSTGVVQWFNDAKGFGFIKPDDGGEDLFVHQSSIRSDGYRSLVEGDHVEFLIATGDREKTKAIDVTGPNGAPLQSKKDNYGGRGGGGRRGGDRRNGGGAGCYQCGDFGHLARDCDRDNSAGGGSACFNCGEVGHLARDCSRGNNGGGGGGGSGSCFRCGEYGHMARDCSNKGSGGGGGGGGCFRCGEVGHLARDCSKESGRFGGSIGGGNVRKSTCFNCGKPGHLARECLEDFG 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0746 248 CDD CSP_CDS 17 81 IPR002059 GO:0003676
Dere13g0746 248 ProSiteProfiles Zinc finger CCHC-type profile. 140 153 IPR001878 GO:0003676|GO:0008270
Dere13g0746 248 ProSiteProfiles Zinc finger CCHC-type profile. 196 211 IPR001878 GO:0003676|GO:0008270
Dere13g0746 248 Gene3D - 11 91 IPR012340 -
Dere13g0746 248 Pfam 'Cold-shock' DNA-binding domain 17 81 IPR002059 GO:0003676
Dere13g0746 248 SUPERFAMILY Retrovirus zinc finger-like domains 104 156 IPR036875 GO:0003676|GO:0008270
Dere13g0746 248 Pfam Zinc knuckle 114 129 IPR001878 GO:0003676|GO:0008270
Dere13g0746 248 Pfam Zinc knuckle 229 243 IPR001878 GO:0003676|GO:0008270
Dere13g0746 248 Pfam Zinc knuckle 195 211 IPR001878 GO:0003676|GO:0008270
Dere13g0746 248 Pfam Zinc knuckle 168 183 IPR001878 GO:0003676|GO:0008270
Dere13g0746 248 Pfam Zinc knuckle 139 154 IPR001878 GO:0003676|GO:0008270
Dere13g0746 248 SUPERFAMILY Nucleic acid-binding proteins 10 84 IPR012340 -
Dere13g0746 248 ProSiteProfiles Zinc finger CCHC-type profile. 230 243 IPR001878 GO:0003676|GO:0008270
Dere13g0746 248 Gene3D - 92 132 - -
Dere13g0746 248 PRINTS Cold shock protein signature 39 48 IPR002059 GO:0003676
Dere13g0746 248 PRINTS Cold shock protein signature 54 72 IPR002059 GO:0003676
Dere13g0746 248 PRINTS Cold shock protein signature 18 33 IPR002059 GO:0003676
Dere13g0746 248 SUPERFAMILY Retrovirus zinc finger-like domains 213 243 IPR036875 GO:0003676|GO:0008270
Dere13g0746 248 MobiDBLite consensus disorder prediction 76 106 - -
Dere13g0746 248 ProSitePatterns Cold-shock (CSD) domain signature. 29 48 IPR019844 -
Dere13g0746 248 SMART csp_8 17 82 IPR011129 GO:0003676
Dere13g0746 248 ProSiteProfiles Cold-shock (CSD) domain profile. 15 81 IPR002059 GO:0003676
Dere13g0746 248 SUPERFAMILY Retrovirus zinc finger-like domains 160 212 IPR036875 GO:0003676|GO:0008270
Dere13g0746 248 SMART c2hcfinal6 195 211 IPR001878 GO:0003676|GO:0008270
Dere13g0746 248 SMART c2hcfinal6 139 155 IPR001878 GO:0003676|GO:0008270
Dere13g0746 248 SMART c2hcfinal6 114 130 IPR001878 GO:0003676|GO:0008270
Dere13g0746 248 SMART c2hcfinal6 229 245 IPR001878 GO:0003676|GO:0008270
Dere13g0746 248 SMART c2hcfinal6 168 184 IPR001878 GO:0003676|GO:0008270
Dere13g0746 248 ProSiteProfiles Zinc finger CCHC-type profile. 115 128 IPR001878 GO:0003676|GO:0008270
Dere13g0746 248 PANTHER COLD SHOCK DOMAIN PROTEIN 2 133 185 - -
Dere13g0746 248 Gene3D - 192 216 - -
Dere13g0746 248 Gene3D - 133 162 - -
Dere13g0746 248 Gene3D - 163 191 - -
Dere13g0746 248 Gene3D - 218 246 - -
Dere13g0746 248 ProSiteProfiles Zinc finger CCHC-type profile. 169 184 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0746 Dere-ChrDere13 9344378 9348401 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Dere13g0746 CSD 1.5e-24 CL0021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g0746 13 9344378 9348401 Dere13g0746 13 9344378 9348401 ECH