Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0742 ATGGATCACCGGAAGGCTCAAGATTTGCCTAAATCAGTACCTGTTACAGCAGATTCAACACCTACAACTTTGCTTCCAAAACGGCATCCAAAACCCAGACACAGAGGTGAAGTGAAAGCGAAGGATTCAATTGCAGCAAGAAAAGTTCAGAAGGCAAACCGCGAGAAATTCAGGAGGAATCGACTAAACGAGCACTTCTTCGAATTGGGGAACACATTAGACCCAGATAGGCCAAATAATGACAAGGCAACTATCCTTACAGACACAATCCAAATACTCAAGGATTTAACTGGACAAGTCCATAGATTAAAAACTGAACATGCATCACTTTCTGAAGAATCCATTGAACTAATGCAAGAGAAAAATGAACTCAGAGAAGAGAAGGCATCTTTCAAATCAGACATTGAAAATCTTAATGCCCAGTATCAGCAGAGAGTTAGATTCATGTTTCCATGGACTTCAATTGATCATTCATATCCAGTTCCTATGCCTCTCCCTCCCAGTTCAATCTCCATTCACCGGCCTCTTTATTCTCTTCCATTATTTCAAAATCAAAATCCTAGTCCCTCTTTGACCTATGTCCCGTTCTCGGCTCCGGCTGTGCAGACGGCTTCTCAGTGTGTGACCATGTCTGACATGTCAAGCAAACAAGAATACAGAAGCAATTTACTGGATCATGAAAGACCCAACAATGCTGAAAGATGTGGTGAGTCTAATGATGTGGCCACAGAGCTTGAACTGAAGATGCCTGGATCCTCAGCACAACATGTCACACATCTGCCCAGAATTGATTGGCTGGTCAACTTGATTAGGTCTCCTGCTATGTCAGCTTCTTCTGCTTTTTTCTTATGTCTTAATGGCACCAGACTCTATAGTCAACTCATTCTGAGCATGTGCTGGTACTTGGCAGCACTTAAGTCAATTGCACCAAGTAGGCTTGGGCGAATTTTCCTGATTTAA 960 0.425 MDHRKAQDLPKSVPVTADSTPTTLLPKRHPKPRHRGEVKAKDSIAARKVQKANREKFRRNRLNEHFFELGNTLDPDRPNNDKATILTDTIQILKDLTGQVHRLKTEHASLSEESIELMQEKNELREEKASFKSDIENLNAQYQQRVRFMFPWTSIDHSYPVPMPLPPSSISIHRPLYSLPLFQNQNPSPSLTYVPFSAPAVQTASQCVTMSDMSSKQEYRSNLLDHERPNNAERCGESNDVATELELKMPGSSAQHVTHLPRIDWLVNLIRSPAMSASSAFFLCLNGTRLYSQLILSMCWYLAALKSIAPSRLGRIFLI 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0742 319 MobiDBLite consensus disorder prediction 1 37 - -
Dere13g0742 319 SMART finulus 52 102 IPR011598 GO:0046983
Dere13g0742 319 PANTHER TRANSCRIPTION FACTOR BHLH121 23 256 IPR044579 GO:0003700|GO:0006879
Dere13g0742 319 CDD bHLH_AtILR3_like 51 125 - -
Dere13g0742 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 116 IPR036638 GO:0046983
Dere13g0742 319 Gene3D - 44 129 IPR036638 GO:0046983
Dere13g0742 319 Pfam Helix-loop-helix DNA-binding domain 47 96 IPR011598 GO:0046983
Dere13g0742 319 Coils Coil 93 141 - -
Dere13g0742 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 96 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0742 Dere-ChrDere13 9281025 9284813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0742 44 258 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 49.138 3.17e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere13g0742 HLH 8.4e-08 No_clan