Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0719 ATGGGACGAGTAATTCGCGCTCAGCGTAAGGGTGCTGGTTCCGTCTTCAAGTCCCACACCCATCACCGCAAGGGTGCTGCTAGGTTCCGAAGCCTCGACTTCGGTGAGCGAAATGGGTATCTGAAGGGTGTAGTCACGGATATCATCCACGACCCTGGACGTGGTGCTCCACTGGCCAAGGTCACTTTCCGCCACCCCTTCAGATACAAGAAGCAGACCGAGCTCTTCGTTGCAGCCGAGGGTATGTACACTGGCCAGTTCGTTTACTGCGGCAAGAAAGCCACCCTCGTTGTTGGTAACGTCTTGCCCCTCAGATCCATTCCTGAAGGAGCTGTTATCTGCAACGTCGAGCACCATGTTGGTGACCGTGGTGTCTTCGCTAGGTGTTCTGGTGATTACGCTATTGTTGTCAGCCACAACCCCGATAACGATACCTCTAGGATCAAGCTTCCGTCTGGTGCAAAGAAGATTGTTCCCAGTGGTTGTCGTGCCATGATTGGGCAGGTTGCTGGTGGAGGGAGAACTGAGAAGCCACTTCTCAAAGCTGGTAATGCTTACCACAAGTTTAGGGTGAAGAGAAATTGCTGGCCTAAGGTACGTGGTGTGGCTATGAACCCAGTTGAGCATCCTCATGGGGGAGGTAACCACCAACATATTGGACATGCAAGTACTGTTAGGCGTGATGCTCCTCCTGGCCAGAAGGTTGGTCTTATTGCCGCCAAGAGGACTGGTCGTCTTAGGGGACAAGCTGCTGCAACTGCTGCTAAAGCAGACAAGGGTGCTTAG 786 0.5318 MGRVIRAQRKGAGSVFKSHTHHRKGAARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKKQTELFVAAEGMYTGQFVYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARCSGDYAIVVSHNPDNDTSRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAATAAKADKGA 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0719 261 FunFam 60S ribosomal protein L8 90 169 - -
Dere13g0719 261 SUPERFAMILY Translation proteins SH3-like domain 99 246 IPR008991 -
Dere13g0719 261 ProSitePatterns Ribosomal protein L2 signature. 197 208 IPR022671 GO:0003735|GO:0005840|GO:0006412
Dere13g0719 261 SMART Ribosomal_L2_C_2 96 231 IPR022669 GO:0003735|GO:0005840|GO:0006412
Dere13g0719 261 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
Dere13g0719 261 Pfam Ribosomal Proteins L2, C-terminal domain 98 225 IPR022669 GO:0003735|GO:0005840|GO:0006412
Dere13g0719 261 Gene3D - 90 169 IPR014722 -
Dere13g0719 261 FunFam 60S ribosomal protein L2 170 247 - -
Dere13g0719 261 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Dere13g0719 261 Pfam Ribosomal Proteins L2, RNA binding domain 13 90 IPR022666 GO:0003735|GO:0005840|GO:0006412
Dere13g0719 261 Gene3D Ribosomal protein L2, domain 3 170 247 IPR014726 -
Dere13g0719 261 PANTHER RIBOSOMAL PROTEIN L2 2 254 IPR002171 GO:0003735|GO:0005840|GO:0006412
Dere13g0719 261 Gene3D - 1 86 IPR012340 -
Dere13g0719 261 FunFam 60S ribosomal protein L2 1 86 - -
Dere13g0719 261 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 1 255 IPR002171 GO:0003735|GO:0005840|GO:0006412
Dere13g0719 261 MobiDBLite consensus disorder prediction 210 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0719 Dere-ChrDere13 9057022 9058339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0719 1 258 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 93.023 0.0 499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1031 09 13233635 13233949 Dere13g0719 13 9057022 9058339 CCT
Dere13g0719 13 9057022 9058339 Dere13g0719 13 9057022 9058339 ECH