Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0717 ATGAAGCGAGCAAGGAAATCATCTAACAGGGTTTCGTGGGCAACTGGAGGTAATCTGTGTCAGGTAAAATTGTTCATATCTGAGGATTGCCCTTCAAAAGTTGGCCAGAAATCTCAAGATCATCTTCAAGCAAAGATGTCATCAATGTTGCATTCAAGTTCTATTGAATATAATGATTTACCCCCTGGGTTTGAATACAATCATTTTCTGAACCAATCAAAGGACGAACTTGCTCGCATTCCTCAGATTAAGTGGAGAAGCCCTCCTCCGTTTGTTTTCAGTTATATTTGGCACGTTGCAGCTGGTGAGGAAAGTCAGGAGAAAGAAAATCAAAAGCTTAGAGAACTGAAAGTGCTTGAAGCAGTTTATCCTCGTCCTTCTGCCATTCCTCCAAGCCCTTCCGTTTCTTTGGATGTAGAAGAGGAAGATTATGATGATAACCTCACTCCTGTGGTCCCTATCATTCCCATTGAGGAAGAAGAGTCTATGGATGATAAACCTGAATTGACAGCAGCAGGGGACCCTCCTGCTACTGTGCAGTCACAAAACTTGCACCAATACACTTCAGCTACCACTGCACCCAATCAATGTAATACCTCTTCTTCTCTTACCTTGCCTGCCCGTGGAAATCCCTTACCTGGGATATCTCATGGTTTGGAAGTAGATTTCGCTGCAGCCTCTGCTGTTGTTGCTGCCATCATGAAGAGTAGTGAGCAAGGAAGCTTGATTGATATGGATTTACTCGTTAAAATATTTAATGACCCAATGATGATTGAGAAATTAGTTAATGATCATAGAACTGCTGCCTCAACTGGAAGTGCATCCTCAAATACAGGGGGTATTCCCACTTCTGGATCGAAGCCTGCAACACCAACAGTTCCATTCTCGACACCTACACTAGGTGAGCCAATTCATGGGGTTACACCTGCAAGTACAGTGGATATGATATCTGCTTCTGGGTTGAGGCCAGCTCCATCAGTTTCGTTGTTGACACCAATAACCGAAACTCCATCAATTCCGATGTCTAGGCCTATGCCTGGTAAACCAGCAACTCCCTCAGTTCCATTGCCTACTCCTGCATCAGATATGCTGAGGCCTGTGAACAAAAATGTTCACCATATGTCAAATGGAGTTTTACCAACTTTAGATACCCAGCCTCCTCAATCAGATACTTTTCTAGCATCTGGGGCGAAGCATGCAGCATCATTGGCTTCCATTCCAACGACTTCTGCTGGTGGTAACATGCATGCAATAACAAATCAGGTGCGATCTACTGCTAGTACAATGCCTTACCAAGCAAGTAAAGGTTCAGCATTTGCTGTTAAGGAAGCTCATCCTGTTAAGGATACCAACTATTTAAAGAATCTGATTAGGCAACATGGTTCAGATAAGCAAGACACCCAGGACTCACAAATAGGTAGCCGGCATAGTAACTTCCAAGATTTGAAATCGGTACATAACAATAAACCAGGGGAAGTTAAATTCAAAATCCAGAAAACTTGCATATACTTTAACAGCTCAAGGGGGTGCCGAAATGGTTCAAGTTGCCCCTATCAGCATGACATGTCAGTTCAGTGGGGAGCTGGTAACGCTCTAGGGGGTCAGAATGCAAAAAGATTGAAACTAGGACATGAAATTAAGTGA 1644 0.4331 MKRARKSSNRVSWATGGNLCQVKLFISEDCPSKVGQKSQDHLQAKMSSMLHSSSIEYNDLPPGFEYNHFLNQSKDELARIPQIKWRSPPPFVFSYIWHVAAGEESQEKENQKLRELKVLEAVYPRPSAIPPSPSVSLDVEEEDYDDNLTPVVPIIPIEEEESMDDKPELTAAGDPPATVQSQNLHQYTSATTAPNQCNTSSSLTLPARGNPLPGISHGLEVDFAAASAVVAAIMKSSEQGSLIDMDLLVKIFNDPMMIEKLVNDHRTAASTGSASSNTGGIPTSGSKPATPTVPFSTPTLGEPIHGVTPASTVDMISASGLRPAPSVSLLTPITETPSIPMSRPMPGKPATPSVPLPTPASDMLRPVNKNVHHMSNGVLPTLDTQPPQSDTFLASGAKHAASLASIPTTSAGGNMHAITNQVRSTASTMPYQASKGSAFAVKEAHPVKDTNYLKNLIRQHGSDKQDTQDSQIGSRHSNFQDLKSVHNNKPGEVKFKIQKTCIYFNSSRGCRNGSSCPYQHDMSVQWGAGNALGGQNAKRLKLGHEIK 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0717 547 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 2 543 - -
Dere13g0717 547 ProSiteProfiles Zinc finger C3H1-type profile. 495 523 IPR000571 GO:0046872
Dere13g0717 547 MobiDBLite consensus disorder prediction 269 297 - -
Dere13g0717 547 MobiDBLite consensus disorder prediction 158 179 - -
Dere13g0717 547 MobiDBLite consensus disorder prediction 460 486 - -
Dere13g0717 547 MobiDBLite consensus disorder prediction 269 300 - -
Dere13g0717 547 MobiDBLite consensus disorder prediction 466 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0717 Dere-ChrDere13 9017534 9022446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0717 82 153 Homeobox Transcription Factor Family AT4G02560 40.278 3.86e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere13g0717 None None None