Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0715 ATGTTTGTGGCGGGGCCCACTCACGAGTTCAATGATGCGGTCCGCCGCATGATTGGAGACCCGCGGCCGACCACCACCACCGTCCTACGTGGACTAAGCCTGTCCACATCATTGTCTAAAATCCAAAACCTGCCTCTGGGATGGAAAACTGAAGTACCAGTAATCGCTTTGATGGAGTCGATGGAGTCATGTGTCCCACCTGGGTTTCGTTTCCATCCAACCGATGAAGAGCTTGTTGGCTATTATCTGAGGAAGAAAGTTGCTTCTCAAAAGATTGATCTTGATGTTATCAGAGAGATCGATCTATATCGTATAGAACCATGGGATCTTCAAGAGAGATGCAGGATCGGGTACGAGGAGCAGAATGAGTGGTATTTCTTCAGCCACAAGGACAAGAAGTATCCGACAGGGACGAGGACGAACAGAGCTACCATGGCAGGGTTCTGGAAGGCGACAGGAAGAGACAAGGCAGTGTACGACAAAACAAAGCTCATAGGCATGAGGAAGACCCTCGTTTTCTACAAAGGAAGAGCTCCGAATGGCCAGAAAACTGACTGGATAATGCACGAATACAGGCTCGAATCTGATGAGAATGGACCTCCACAGGAAGAAGGATGGGTTGTATGCAGAGCTTTCAAGAAAAAAACCAATGGCCAAACGAAGGCCATAGAAGGATGGGATTCAAGCTACTTCTTCGACGAAACAAGTGGAGCCAGCTCGGTCATCGATCCTGTCGACTTCATCTCAAGGCAGGCTCGTCATAGTTATAATTTAGCACAAAACAATTACATGTGCAAGCAAGAGATCGAAGTGGATAACTTGAGCACTTTCATTCACGCATCAGACCAATTCCTACAGCAGCTTCCACAGCTAGAAAGCCCGTCTCTGCCATTGATAAAGAGGCCAAGCTCATCAGTTTCTATAATATCAGACAACAACAATAATAACGAAGAAGATGACCAAACCAAAATATTACCCACAAAGAAAGTGACTACTGATTGGAGGGCTCTTGACAAATTTGTGGCTTCTCAACTGAGCCAAGAAGACAGCTTTGAAACCGCTAATACTAGCTCGGACATGTCCTCGTTGCTGCTACTGCAGAGCACTAGTAGAGATGAGGAAGAAGGGAATAAGTTAAGCTTAAGCCCATTTTTGAGTACAAGAAACTCATCTGACTGTGATATTGGGATATGCGTATTTGACAAATGA 1209 0.4582 MFVAGPTHEFNDAVRRMIGDPRPTTTTVLRGLSLSTSLSKIQNLPLGWKTEVPVIALMESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKKTNGQTKAIEGWDSSYFFDETSGASSVIDPVDFISRQARHSYNLAQNNYMCKQEIEVDNLSTFIHASDQFLQQLPQLESPSLPLIKRPSSSVSIISDNNNNNEEDDQTKILPTKKVTTDWRALDKFVASQLSQEDSFETANTSSDMSSLLLLQSTSRDEEEGNKLSLSPFLSTRNSSDCDIGICVFDK 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0715 402 Gene3D NAC domain 74 219 IPR036093 GO:0003677|GO:0006355
Dere13g0715 402 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 62 315 - -
Dere13g0715 402 ProSiteProfiles NAC domain profile. 65 214 IPR003441 GO:0003677|GO:0006355
Dere13g0715 402 Pfam No apical meristem (NAM) protein 66 193 IPR003441 GO:0003677|GO:0006355
Dere13g0715 402 SUPERFAMILY NAC domain 61 214 IPR036093 GO:0003677|GO:0006355
Dere13g0715 402 FunFam NAC domain-containing protein 74 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0715 Dere-ChrDere13 8986333 8996784 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0715 58 401 NAC Transcription Factor Family AT2G18060 65.517 3.32e-163 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere13g0715 NAM 3.5e-38 No_clan