Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0713 ATGTCTTCCACAGGAAAAGCCGATGCCCCCACCGTTAATCAACCAGCACATAAACCTAAGACTGCGAAGGAGAAGAAGCCTAAGCAGGCCAAAACAGCTTCTCATCCTTCCTATTTTCAGTCGCCTGAGGAGCGCGGATTTCGTGGAATTTTGCAGATGATTAAGGATGCACTGCTGGCTCTGGACGAGAGGGGTGGTTCCAGCCCATACGCCATAGCCAAGTATATGGAGGAGAAGCACAAGGCTGAGCTTCCAGCGAATTTCAGGAAGATTATGGCTCTGCAGTTGAAGAAGCAAGCTGCGAAAGGCAAGCTCATCAAGATTAAGGCATCGTACAAGCTCTCGGGAGCAGCAAAGAAGGAAAGGGGAAGCACTACCAATGTCACAAAATCCACTACAGAGAAGGAGAAGAAGAAGAAGCAACAACGCTCGAAGCAAAGCGAGGCCATAACTGCCAAGTTGTCTAAGAAAACTGAGGCGGCTAAGAAAGTTGGGGTGAAGAAGACGATGAAATCAACTCCTGCGAAGCCGAAGCAGCCTAAGTCTATCAAGTCTCCGGCCAAGAGGACTAGGAAAACTACTGCGTGA 588 0.4915 MSSTGKADAPTVNQPAHKPKTAKEKKPKQAKTASHPSYFQSPEERGFRGILQMIKDALLALDERGGSSPYAIAKYMEEKHKAELPANFRKIMALQLKKQAAKGKLIKIKASYKLSGAAKKERGSTTNVTKSTTEKEKKKKQQRSKQSEAITAKLSKKTEAAKKVGVKKTMKSTPAKPKQPKSIKSPAKRTRKTTA 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0713 195 Pfam linker histone H1 and H5 family 51 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere13g0713 195 SUPERFAMILY "Winged helix" DNA-binding domain 48 124 IPR036390 -
Dere13g0713 195 PANTHER HISTONE H1 11 191 - -
Dere13g0713 195 Gene3D - 48 125 IPR036388 -
Dere13g0713 195 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 34 116 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere13g0713 195 SMART h15plus2 32 111 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere13g0713 195 MobiDBLite consensus disorder prediction 131 166 - -
Dere13g0713 195 MobiDBLite consensus disorder prediction 1 45 - -
Dere13g0713 195 CDD H15 32 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere13g0713 195 MobiDBLite consensus disorder prediction 114 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0713 Dere-ChrDere13 8971041 8971741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0713 53 168 Single Myb Histone (SMH) Gene Family AT1G72740 34.677 1.97e-08 51.2