Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0709 ATGAGAACGCTTTGTGACGCTTGTGAGAGCGCCGCCGCCATCGTTTTCTGCGCCGCCGATGAGGCCGCTCTCTGCCGTGCCTGTGACGAGAAGGTACACATGTGTAATAAGCTAGCTAGCCGCCATGTAAGAGTTGGTCTTGCAAATCCGAGTGATGTGCCGCGCTGCGACATATGTGAAAATGCACCTGCATTCTTCTATTGCGAGACAGATGGAAGTTCACTTTGTTTGCAGTGTGATATGATGGTTCATGTTGGAGGTAAAAGAACACATGGAAGATATCTTCTTTTTAGGCAGAGGGTTGAGTTTCCCGGTGATAAACCTGGTCATTCGGAAAACCCAGGTTCACTGCCTCTGGAACCTGTTGAGACAAAAAGAGGACAAAATCAGTTGTCCAAAATAAAAATGGGAGAAAAACAACAAAATCACAGGATGGCTCTAATTGCAGCACCAGAACCTGAAGCTGATGGGCATGCCAAGATGGAAACTAACATGATTGATTTGAACATAAAGCCTCAGAGAGTACATGAACAAGCTTCCAATAATCAGCCATAA 555 0.4577 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCETDGSSLCLQCDMMVHVGGKRTHGRYLLFRQRVEFPGDKPGHSENPGSLPLEPVETKRGQNQLSKIKMGEKQQNHRMALIAAPEPEADGHAKMETNMIDLNIKPQRVHEQASNNQP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0709 184 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Dere13g0709 184 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Dere13g0709 184 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Dere13g0709 184 FunFam B-box zinc finger protein 19 2 92 - -
Dere13g0709 184 MobiDBLite consensus disorder prediction 104 127 - -
Dere13g0709 184 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 144 - -
Dere13g0709 184 SMART bboxneu5 51 96 IPR000315 GO:0008270
Dere13g0709 184 SMART bboxneu5 1 47 IPR000315 GO:0008270
Dere13g0709 184 CDD Bbox1_BBX-like 56 96 - -
Dere13g0709 184 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Dere13g0709 184 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Dere13g0709 184 Gene3D Classic Zinc Finger 2 91 - -
Dere13g0709 184 CDD Bbox1_BBX-like 4 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0709 Dere-ChrDere13 8931529 8933675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0709 1 183 C2C2-CO-like Transcription Factor Family AT2G21320 63.388 7.65e-78 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Dere13g0709 zf-B_box 1.6e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1013 09 13040534 13042599 Dere13g0709 13 8931529 8933675 CCT
Dere13g0709 13 8931529 8933675 Dere09g1013 09 13040534 13042599 ECH
Dere13g0709 13 8931529 8933675 Dere13g0709 13 8931529 8933675 ECH