Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0703 ATGGAGTGCGAAGCTGCGTTGAAAACCAGTTTTCGGAGAGACACGAGCTTCATAATCCTTGAGGAGTTGTCGGCGTTGAACGTGCAAAATGTCACCCCTTCCGACGACTTCTTCGTGGATGACCTTCTTAACTTCTCGCACGAAGACGCCGTTGTAGAAGAACAACCCCAACAACATGAAGAAGAGCGAAAGGATCACTCTTTTTCCGTTTCCCCTCAACAGCCCAACCAGAGCCATCATTTTTGTAACCTTAGCACCAGTTATTCTGTGAAAGACGAGTTCGGGTCTAGCGAACTCACCGTGCCGGCGGAGGATGAAGCAGACTTAGAGTGGTTGTCTCATTTCGTGGAGGATTCCTTCTTGGAATACTCCGCCGCTTACCCCGTCGGAACTGTAACGGAGAATCCGAAGAGCGGACAGGCAGTGAAAGTACTTGAATCCGAAACCCCTGTTTCGGCCCGACCCTGGTTCCAAACTCCGATTCCGGCAAAGGCTAGGAGCAAACGAACACGAACCGGCGTTCGGGTTTGGCCACTGGGGTCTCCTTCCTTCACCGACTCGTCATCCTCAACCTCCTCCTCGTCCTCATCCTCTTCGTCCCCTTCCAGCACGTGGCTAATTTACACCAACGTAACCCAAAATATCGAGCCAATTACCTCCGAGGCAAAACCGCCGGCGACGAAGAAACCAAAGAAAAAGCCGGTGCCTGAGGGGGCTGGGAGCGGTGCGGCTCCGGCACCCCGCAGGTGCAGCCATTGCGGCGTGCAGAAGACCCCACAGTGGCGGACGGGGCCGCTCGGAGCGAAAACGCTGTGCAACGCCTGTGGGGTCCGATACAAGTCGGGTCGACTTTTACCCGAATATAGACCCGCTTGTAGCCCAACATTCTCGAGTGAATTACACTCTAACCACCACCGTAAAGTGCTGGAGATGCGGCGGAAGAAGGAGGTAATGAGTGGAATCGGGTCGGGTATGGACTCGTCACCGGCTGTCCCCAGTTTTTGA 1005 0.5453 MECEAALKTSFRRDTSFIILEELSALNVQNVTPSDDFFVDDLLNFSHEDAVVEEQPQQHEEERKDHSFSVSPQQPNQSHHFCNLSTSYSVKDEFGSSELTVPAEDEADLEWLSHFVEDSFLEYSAAYPVGTVTENPKSGQAVKVLESETPVSARPWFQTPIPAKARSKRTRTGVRVWPLGSPSFTDSSSSTSSSSSSSSSPSSTWLIYTNVTQNIEPITSEAKPPATKKPKKKPVPEGAGSGAAPAPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVMSGIGSGMDSSPAVPSF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0703 334 PANTHER GATA TRANSCRIPTION FACTOR 25 317 - -
Dere13g0703 334 MobiDBLite consensus disorder prediction 162 203 - -
Dere13g0703 334 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 245 306 - -
Dere13g0703 334 CDD ZnF_GATA 249 297 IPR000679 GO:0006355|GO:0043565
Dere13g0703 334 PIRSF Txn_fac_GATA_plant 5 330 IPR016679 GO:0003677|GO:0005634|GO:0045893
Dere13g0703 334 SMART GATA_3 244 298 IPR000679 GO:0006355|GO:0043565
Dere13g0703 334 MobiDBLite consensus disorder prediction 181 203 - -
Dere13g0703 334 Gene3D - 242 318 IPR013088 GO:0006355|GO:0008270
Dere13g0703 334 MobiDBLite consensus disorder prediction 218 253 - -
Dere13g0703 334 ProSiteProfiles GATA-type zinc finger domain profile. 244 280 IPR000679 GO:0006355|GO:0043565
Dere13g0703 334 MobiDBLite consensus disorder prediction 52 78 - -
Dere13g0703 334 MobiDBLite consensus disorder prediction 52 68 - -
Dere13g0703 334 Pfam GATA zinc finger 250 284 IPR000679 GO:0006355|GO:0043565
Dere13g0703 334 ProSitePatterns GATA-type zinc finger domain. 250 275 IPR000679 GO:0006355|GO:0043565
Dere13g0703 334 FunFam GATA transcription factor 241 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0703 Dere-ChrDere13 8853670 8854770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0703 4 334 C2C2-Gata Transcription Factor Family AT5G66320 51.705 7.07e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere13g0703 GATA 4.7e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1000 09 12905330 12907273 Dere13g0703 13 8853670 8854770 CCT
Dere13g0703 13 8853670 8854770 Dere09g1000 09 12905330 12907273 ECH
Dere13g0703 13 8853670 8854770 Dere13g0703 13 8853670 8854770 ECH