Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0694 ATGCAGACACAAAGGGAAACTGTTCAGAACTACGAAAGAAAAGCTCATAAACTCTGTGTGGCTGAGGAATCAGAGAGAGAGAGAGAGAAGAGGAAAGAGAACGGGGTTTTGAGACTTAAATTGGAGGAGGAGCAGCAGCTGCAGGCGGCAGCAGAGTTTGCAGAGAGAAAGAGAATGGGCATGGCGGCGTTGCAGTTGCAGATGCAGCAAGAGCCGTATCTCTTTTTGTTTAAAGGTGGCAAAACAATGGCGGGTTTATTCTCACTAGGCGGTGGAGCTAGAGGGCACAGCCAGCAACAACAAGATCAGGAACAACAAGGGCATCAAAATCCAACCACGGAATTTCCTCCAGGCGAGACCTTGTACTGGTATAAGAACGAAGATGTGTCGTCTTACAGAGGGTTCGAGCTGTGGAATCAGCAACAGGAGCAGCTCATGTCTGAAACGCGTGCGGTGGAACAAGGTGTGTACTCGTCGGGGGTTGGGGGGAGTACTAGGGGCTACGATGATCCGTCGTCGTCGTCGAGATCGTCGGGGATGATGATGACGCGAGGGCGAGGAGGAATAAGCTGCCAAGACTGCGGGAATCAAGCGAAGAAGGATTGCCCTCACATGAGGTGCAGGACTTGCTGTAAAAGCAGAGGTTTCCATTGCCAAACCCACATCAAGAGCACTTGGGTTCCAGCTCCGAAGCGTCGCGAGCGACAACAACAGCTTACGGCTTTGCAGCAACAGCTCCAACTTCACCCAGACAGTCATCCCAAAAGGCAGAGGGATAGAGGGTTAGAGCCTGAGGATTTTCCTGCAGTGGTAAGCTCGCCTGCGGAGTTCCGGTGTGTGCGGGTGAGTTCCATGGACGACGCTGACGAACAGTACGCATACCAAACGGCAGTGAACATAAGAGGGCATGTGTTCAGAGGAATCCTGTACGACCAAGGTCCCGATTATAATTACATGGCCGGGGACGAGAACGCCACCGCCAGCGTCGGCGGAGTTCAACCATTGAACCTCATCGCCGGTGCCGCCAGCAGCACGTCTGCATTACCCGCAGGCGCAACTAGTGGTGGTGCCATGGTTTCATCTAGTGGAGCAGTTGTGGATCCGTCTTCTTTGTATCCAGCGCCACTTAACACCTTCATGGCTGGAGGTAGTGGTACGCAATTTTTCCCTCACCCAAGATCTTCATAA 1188 0.5278 MQTQRETVQNYERKAHKLCVAEESEREREKRKENGVLRLKLEEEQQLQAAAEFAERKRMGMAALQLQMQQEPYLFLFKGGKTMAGLFSLGGGARGHSQQQQDQEQQGHQNPTTEFPPGETLYWYKNEDVSSYRGFELWNQQQEQLMSETRAVEQGVYSSGVGGSTRGYDDPSSSSRSSGMMMTRGRGGISCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHIKSTWVPAPKRRERQQQLTALQQQLQLHPDSHPKRQRDRGLEPEDFPAVVSSPAEFRCVRVSSMDDADEQYAYQTAVNIRGHVFRGILYDQGPDYNYMAGDENATASVGGVQPLNLIAGAASSTSALPAGATSGGAMVSSSGAVVDPSSLYPAPLNTFMAGGSGTQFFPHPRSS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0694 395 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 83 377 IPR007818 GO:0003700|GO:0006355
Dere13g0694 395 Pfam Domain of unknown function (DUF702) 188 315 - -
Dere13g0694 395 NCBIfam putative zinc finger domain, LRP1 type 190 232 IPR006510 -
Dere13g0694 395 NCBIfam LRP1 C-terminal domain 267 314 IPR006511 -
Dere13g0694 395 Coils Coil 37 57 - -
Dere13g0694 395 MobiDBLite consensus disorder prediction 244 267 - -
Dere13g0694 395 MobiDBLite consensus disorder prediction 88 119 - -
Dere13g0694 395 MobiDBLite consensus disorder prediction 93 116 - -
Dere13g0694 395 MobiDBLite consensus disorder prediction 158 181 - -
Dere13g0694 395 MobiDBLite consensus disorder prediction 251 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0694 Dere-ChrDere13 8751487 8753549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0694 83 382 C2H2 Transcription Factor Family AT5G66350 45.000 1.47e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Dere13g0694 DUF702 2.3e-56 No_clan