LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere13g0684	ATGAGCTACATTAGTAAGCCGGATCACTTTTTCTCTTGTCTTTCAAAAGTTTTCAAATTAACAAAACCCATTAGATGTCTTCCTCTCATCTCTTCTCTCTCTTCGCTACGGATTTCTTCCATCATCTTCCCTTCATTAGTCTTCTGCTCTTCCTTTCTTGGCATTTCATCTATTGGTCCATACATGACCCTTTCCCATAGTCCCATGTCCAAACTTTCAAAGCCATTGGTTCATCTTATTCAGGTGCATCGTAATAAACCTAAATATTCCTACTTCATCGTTGATTACTGCTTTTGCTCTTGTTGCGCACATGCAAAGTTACGCACTATTCACATTTTTGCTAGACAGCTGCGAGGAAACTTCCGCCCACCTGCTGAGTCACAAGCGACGATGGTGATGACTTGGATTCCATTTTCCACCGTTCCCATGAGACCTTTCATGGAGTTTATTTCTTCCCCCTTTACAACTATTCGCTCCACATCATCATGGTTCGAGGCCTACGCTGCCTTCTCTACTTTCTTGATGCTTCTACGAACTGCAATCAACGATCTAATTCCCCGACAAGTTCAATCCTTCATCGTCTCCAAGCTACAACATTTATTCTCTGCGTCTCAACTCAATCATCAGGTCACACTTGAGATCGATCAGCATTGGGATGGCCATCGTAACCACCTCTTCAAAGCCGCCAGAGAGTACCTTCCCACCAGAATCACTCACACTTACAGATCTCTCAAAGTTGGCAAATTAGAACATTATAAACACTTAGCTGTGGCCGTGGACGGAAAGCAAGAGGTGGTGGATGAATTTGAAGACATCAAGCTTTCATGGAAGCTTCAAGTGACCAAAGACGATTCTTCCCATTTCGAGAAGAATACGTTTATACTAAGCTTTGATCAGAAACACAGAGAGAAAGTAAAGAGAAGGTATTTAGATCACATTTTAAACACCTACGAGGCAATGAAAGCTGGACAGAGGACTGTGAGGCTCCATTATATATCCCGTGGGGAATGGGATTGTAGGCAATTAACACACCCTGCTTCATTTGAAACCCTCGCGTTTGATCCTGAGCTGAAGCAGAGTATTATTGATGACATACAGAGGTTCTTGAAGAGGAAGGAGCTGTACAAGAAAGTGGGTAAGCCTTGGAAACGTGGGTATCTGCTGTATGGGCCTCCTGGAACTGGGAAATCCAGCCTCGTCGTAGCCATGGCCAATTACTTGAAGTTTGATGTGTATGATTTGGAGCTCAGTCGGGTCTCGTCTAACTTAGATCTCATGGAATTAATGAGAGATACATCCAACCGTTCCATCGTTGTGATTGAAGATGTAGATTGCAACAAAGAGGTTCATGCTCGATCTCCAGTCAAAGATTCTTCACCTGCCTCTTCCTCAAGCTCAGACTCAGACTCAGCCTCTGACACTGACATCCAGCCTACCAAGGTGAAGAAGAGGTTGACGCTGTCTGGTCTACTTAATTCCATGGATGGCTTGTGGTCGGGCAGTGAAGAGGAGCGAATTTTGATATTCACAACAAATCACATAGAAAGAATAGACCCAGCATTGCTGCGACCAGGTCGAATGGACATGCACATTCACTTGCCCTTCTGTAAAGCCAAGGCATTCCGAATCTTTGCCTCCACTTATCTGGATATTCAGGGGCATCACCCACTCTTCGAACAAATCGAAGCGCTATTGGAGGAAATTGATGTCACTCCTGCAGTAGTGGCAGAGCAATTGCTGAGGTTTGAGGATCCTGAGGTTGCTTTGGAAGAATTTATCAAATTTCTCGAAGAGGAGAGAAGAACACTGAGTGAAGCACAAAAGCCTGAGTAG	1833	0.4419	MSYISKPDHFFSCLSKVFKLTKPIRCLPLISSLSSLRISSIIFPSLVFCSSFLGISSIGPYMTLSHSPMSKLSKPLVHLIQVHRNKPKYSYFIVDYCFCSCCAHAKLRTIHIFARQLRGNFRPPAESQATMVMTWIPFSTVPMRPFMEFISSPFTTIRSTSSWFEAYAAFSTFLMLLRTAINDLIPRQVQSFIVSKLQHLFSASQLNHQVTLEIDQHWDGHRNHLFKAAREYLPTRITHTYRSLKVGKLEHYKHLAVAVDGKQEVVDEFEDIKLSWKLQVTKDDSSHFEKNTFILSFDQKHREKVKRRYLDHILNTYEAMKAGQRTVRLHYISRGEWDCRQLTHPASFETLAFDPELKQSIIDDIQRFLKRKELYKKVGKPWKRGYLLYGPPGTGKSSLVVAMANYLKFDVYDLELSRVSSNLDLMELMRDTSNRSIVVIEDVDCNKEVHARSPVKDSSPASSSSSDSDSASDTDIQPTKVKKRLTLSGLLNSMDGLWSGSEEERILIFTTNHIERIDPALLRPGRMDMHIHLPFCKAKAFRIFASTYLDIQGHHPLFEQIEALLEEIDVTPAVVAEQLLRFEDPEVALEEFIKFLEEERRTLSEAQKPE	610

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere13g0684	610	Gene3D	-	339	531	IPR027417	-
	Dere13g0684	610	PANTHER	BCS1 AAA-TYPE ATPASE	166	600	-	-
	Dere13g0684	610	Pfam	ATPase family associated with various cellular activities (AAA)	387	534	IPR003959	GO:0005524\|GO:0016887
	Dere13g0684	610	MobiDBLite	consensus disorder prediction	450	477	-	-
	Dere13g0684	610	CDD	RecA-like_BCS1	361	533	-	-
	Dere13g0684	610	Gene3D	-	532	605	-	-
	Dere13g0684	610	ProSitePatterns	AAA-protein family signature.	505	523	IPR003960	GO:0005524\|GO:0016887
	Dere13g0684	610	Pfam	Domain associated at C-terminal with AAA	185	279	IPR025753	-
	Dere13g0684	610	SMART	AAA_5	382	537	IPR003593	GO:0016887
	Dere13g0684	610	MobiDBLite	consensus disorder prediction	456	475	-	-
	Dere13g0684	610	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	261	598	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere13g0684	Dere-ChrDere13	8632772	8636998	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere13g0684	384	533	Calmodulin-binding Proteins	AT3G56690	27.848	1.01e-08	56.6